Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq6 179 4e-40 seq4 136 4e-27 seq5 114 1e-20 seq3 114 1e-20 seq1 104 2e-17 >seq6 Length=2644601 Score = 179 bits (198), Expect = 4e-40 Identities = 499/753 (66%), Gaps = 23/753 (3%) Strand=Plus/Minus Query 120372 CTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCATAAACTCGAACGGGTTGCT 120431 ||| |||||||| | ||||||| || ||| || | | ||| || ||||| |||||| | Sbjct 75932 CTCGAAAAAGTTGGCCTTGCCCTGCAGCGAGATCATCTCCATGAAGTCGAAGGGGTTGGT 75873 Query 120432 CGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAGTCGGTCCGCTACAAACTCAAT 120491 || ||| | ||| | ||| | |||||||| ||||| || ||||||||||| Sbjct 75872 CGAGTTGTACATCTTCTCGTTGCCGAGGGCGACGAGCAGACGGTCGGCGACAAACTCAAT 75813 Query 120492 GTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGCCACCGGCAACGCCGACGTGAA 120551 ||||| ||||||| | ||||||||||| | | || || |||| ||| |||| Sbjct 75812 GTACTGGCACATGAGGTTGGCGTTCATGCCGATGAGCGAGACAGGCAGGGCCTCGGTGAG 75753 Query 120552 AAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGCGAGCATAGTGTGGCCGGGCAT 120611 ||||||| |||||| | || |||||||||| || | ||| ||| | ||| Sbjct 75752 GAACTCCTGCTCAATCTTGACGGCCTCCTTGATAATCTTGTTGATAATGTCG--GGG--- 75698 Query 120612 CTTGTGTTCGATGCGCGTTCGGT------AGTACAGGCACGCAAAGTCCGTGTGCAGGCC 120665 || || || | ||| ||| || ||||| |||||||| ||||| || || Sbjct 75697 --TGGGTGCGGCG-GCGGA-GGTGGCCAAAGAGGAGGCAGGCAAAGTCGGTGTGGAGACC 75642 Query 120666 CTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCATGATGCCTTTCGTCTT 120725 |||||||||||| || |||||||| || || || |||||||||| ||| | |||| Sbjct 75641 CTCGTCGCGCGAGATGAGCTCGTTCGAGAATGTGAGTCCGGGCATGAGGCCACGCTTCTT 75582 Query 120726 GATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCTCCACGATGGCAAAGGC 120785 || |||| |||| ||| || ||||| ||||| | |||||| ||| |||||||| Sbjct 75581 GAGCCAGAAGATGGAGGCGAACGACCCCGAGAAGAAGATGCCCTCGACGGCAGCAAAGGC 75522 Query 120786 GACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCCACTTCATGGCCCACTCGGC 120845 | | |||||||| |||| || | | | | |||||| | ||||| ||||| Sbjct 75521 AATGAGACGCTCGGCGAACGACGACTGTTCGTCGGTGATCCAGCGGAGCGCCCAGTCGGC 75462 Query 120846 CTTTTTGCGCACGCACGGCATCCGCTCGAACGCGTTCAGCAGCATGTCGC-GCTCGCCCT 120904 ||| || | ||| || || ||||| || || | || | || || || | Sbjct 75461 CTTCTTCTTAATGCAGGGAATAGTCTCGATGGCCTTGAAGAGGTACTGGCGGCGGGCAGT 75402 Query 120905 CCTCCGCAATCAGCTGATGGATGAGCAGATTGTACATTTCCGTGTGCACGCACTCGATCA 120964 || | || || | |||||| || ||| | |||| ||| | | ||| |||| Sbjct 75401 GTCGCGGATGTAGGTG-TCGATGAGAAGCGAGTAGGTCTCCGAGTGGATGTTCTCCATCA 75343 Query 120965 GCACTTGCTGGTTGTAAAAGTACTGCGCCTC--CAGCTCGGGCACCGC-CCGCTGCATGT 121021 | || | ||| ||| || ||||| || || || ||| | |||| | | | Sbjct 75342 TGATCTGGAAGCCGTAGAAGGTCTTGGCCTCTGCA-ATCTGG-ACCTCGCCGCAG-AAGC 75286 Query 121022 ACTCGATAAGGTTAATATTCACGATACTGTCGGCGGCGGCGAAGAACGCCAGCACGTGCT 121081 ||||| ||||| || ||||| | ||| | |||||||| || || || ||||||| Sbjct 75285 GCTCGACGAGGTTCTCGTTGACGATTCCGTCCGACGCGGCGAAAAAGGCAAGGACGTGCT 75226 Query 121082 TGATAAAGTGTCGCTCGTCGTCCGTGAGCTTGT 121114 |||||||| ||||| | || ||||||||| Sbjct 75225 CGATAAAGTAACGCTCATTATCGTTGAGCTTGT 75193 Score = 129 bits (142), Expect = 6e-25 Identities = 149/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| || | ||| | | | |||||||||||||| || Sbjct 27585 GTAGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCA-TCCTCGAGCTGCTTTCC 27527 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || ||||||||||| || |||||||| |||||||| |||||| ||| Sbjct 27526 GGCAAAGATAAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTT 27467 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| ||||| | | ||| || || | ||||| ||| |||||||||||||| Sbjct 27466 GACGTTGTCAATGGTGTCCGACGACTCGACCTCAAGGGTGATGGTCTTGCCGGTCAGAGT 27407 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 27406 CTTGACGAAAATCTGCAT 27389 Score = 113 bits (124), Expect = 4e-20 Identities = 133/178 (75%), Gaps = 4/178 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 |||||||| ||||| || ||||| ||| | || ||| ||||||||||||||||| Sbjct 27357 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGT--ACGGCCGTCCTCGAGCTGCTTGC 27300 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| || |||||||||||||| || ||||| |||||||| |||||| || Sbjct 27299 CGGCGAAAATAAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCT 27240 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAG 133639 ||| | || | ||||| | || ||| || || | ||||| ||| ||||| || || Sbjct 27239 TGACGTTGTCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAG 27182 >seq4 Length=3045899 Score = 136 bits (150), Expect = 4e-27 Identities = 131/168 (78%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||||||||||||||| ||| | || || ||||||||||| || |||||||| ||||| Sbjct 1996766 GTCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGGATGCCCTCCTT 1996707 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||||| | || | ||||| | | ||| || |||| ||||| Sbjct 1996706 GTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGAT 1996647 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATGGCTTATTTATT 133672 ||| |||||||| || || || ||||||||||||||||| |||| || Sbjct 1996646 GGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCATGGCGGATTTTTT 1996599 >seq5 Length=2819049 Score = 114 bits (126), Expect = 1e-20 Identities = 137/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||| ||||| || ||||| || | ||| |||||||||||||||||| Sbjct 1774689 GGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCC 1774630 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| ||||||||||| || |||||||| |||||||| |||||| ||| Sbjct 1774629 GGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 1774570 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||| | | |||||| |||| ||||| ||| ||||| || || || Sbjct 1774569 GACGTTGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTAAGGGT 1774510 Query 133643 TTTTAC 133648 || || Sbjct 1774509 CTTAAC 1774504 >seq3 Length=3131490 Score = 114 bits (126), Expect = 1e-20 Identities = 96/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 116487 GCACGAGTTTGGCGACACCAGCAACGGCTGCACCTCCGCCGGCGAACACTTCAACCCCAC 116546 ||||||| |||| |||||| |||||||||||||| ||||| | |||||||||||| Sbjct 2531674 GCACGAGCTTGGTGACACCTCGAACGGCTGCACCTCGGCCGGTGGCCACTTCAACCCCCA 2531615 Query 116547 CGGCCAGGACCACGGCGCGCCCAACGCCGCCGTTCGTCACGTCGGTGACCTGGGCAAC 116604 |||| || ||||||| || |||| |||||||| || |||| |||||||| |||||| Sbjct 2531614 CGGCAAGAACCACGGTGCCCCCACCGCCGCCGAGCGCCACGCTGGTGACCTCGGCAAC 2531557 >seq1 Length=5305799 Score = 104 bits (114), Expect = 2e-17 Identities = 158/221 (71%), Gaps = 3/221 (1%) Strand=Plus/Plus Query 120643 CACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGG 120702 ||||||||||||||||| | ||| |||||||| ||||| |||||||| || || || Sbjct 776271 CACGCAAAGTCCGTGTGTATGCCTTCGTCGCGGGATATGAGCTCGTTTGAGAAGGTGAGT 776330 Query 120703 CCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAAC 120762 ||| |||| | || | |||||| |||| ||||||||||| ||||||||||| Sbjct 776331 CCGCGCATCAAACCACGCTTCTTGAGCCAGAAGATGGCGGCAAACGATCCCGAAAAGAAG 776390 Query 120763 ACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCG 120822 | ||| || ||| ||||| || | | || | |||| | | || | |||| | Sbjct 776391 ATGCCTTCAACGCACGCAAACGCAATGAGACGTGTGCGGAACGGCATC-TCGT-CTGT-G 776447 Query 120823 ATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGG 120863 || | |||| ||||| |||||||| ||||| | |||||| Sbjct 776448 ATGTATTTCAGCGCCCAGTCGGCCTTCTTGCGGATGCACGG 776488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420642888240