Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq9 145 9e-30 >seq9 Length=1756552 Score = 145 bits (160), Expect = 9e-30 Identities = 240/343 (70%), Gaps = 4/343 (1%) Strand=Plus/Minus Query 147162 GGGGTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGAT 147221 ||||||||| ||||||| ||| | |||||| |||||| | ||||| ||||| Sbjct 1205756 GGGGTTCCACGCCGAGAGCACGATACGCCTGTCGGTGGGGTTGTTGACAATCTTGTCGAT 1205697 Query 147222 AACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTC--CCGCAGTCCACGTAC 147279 ||| | | |||||||| |||||||||||| ||||| ||| | || ||| |||| Sbjct 1205696 GACCTCCTTGAGCTGGTCGACGCCCTGGCCCGAGTAGTC-GTCGTCGGCCGTCTT-GTAC 1205639 Query 147280 CTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTG 147339 || |||||||| | ||| ||||||||||| ||||| || |||||||| | | Sbjct 1205638 TCTGCGCCAAAGTGGCGCCATTGGAAGCCGTAGACTGGTCCGAGGTCGCCCTCGCGGCGG 1205579 Query 147340 TGCGAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACT 147399 ||||||| ||| | || | ||| ||||| || |||| | ||||||||||| ||| Sbjct 1205578 TGCGAGAGGCCGACGCGGTCGAGGTACTCGCGGCTGCCGTTGCCGTCCCAGATGTGCACG 1205519 Query 147400 CCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCC 147459 || ||| | ||||| ||| ||| |||| | | ||||||||| |||||||| Sbjct 1205518 CCACGGGCCGCGAGCTTGGCGCCGTCGGTGCAGCCGCTCACGAACCAGAGGAGCTCCTCG 1205459 Query 147460 AAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGA 147502 | || || | | ||||| | ||| ||||||| || |||| Sbjct 1205458 ATCACGCCGCGCGTGAAGACGCGCTTCGTGGTCAAAAGAGGGA 1205416 Score = 89.7 bits (98), Expect = 6e-13 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 146874 CTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCACGTG 146933 ||||||| ||||||| || ||||| | | | ||||| | || || || || | ||| Sbjct 1206168 CTTGAGCGTGGGGAACGGGCGGGGCTCGCGCTCGAGCTGGACCTTGAGCGGGTCAATGTG 1206109 Query 146934 GTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGT 146993 || | |||| ||||||||||| |||| | | | ||| || || | |||||| Sbjct 1206108 GTCGCGGTACACGTGCGCGTCGCCCATCTGGAGGATAAACTCGTGGGGTTCGGTGCCGGT 1206049 Query 146994 CACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAG 147053 | || || | ||||| |||||| |||| ||| ||| |||||||| || || ||||| Sbjct 1206048 AATGTACGCGATCATGTGGGTGAGGAGCGCGTATGAGGCGATGTTGAACGGCACGCCCAG 1205989 Query 147054 GCCCATGTC 147062 ||||| ||| Sbjct 1205988 GCCCAGGTC 1205980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583487810366400