Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq6 228 1e-53 seq3 170 3e-36 seq8 143 4e-28 seq1 107 3e-17 >seq6 Length=2644601 Score = 228 bits (252), Expect = 1e-53 Identities = 350/492 (71%), Gaps = 13/492 (3%) Strand=Plus/Plus Query 1455791 CAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGT 1455850 ||| |||||| |||| || || ||||||||||||||| | |||| | | ||||| Sbjct 75122 CAAGAAGGCCCAGGCGTCGTTCTGGACCGCCGAGGAGATTAACCTTGCCCCCGACCTTCA 75181 Query 1455851 CCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTT 1455907 | |||||| ||| | ||| | ||||| | || ||| |||||||||| ||||| Sbjct 75182 CGACTGGGACAACAAGCTCAACGATAATGAGCGTTACTTTATCGAGCACGTCCTTGCCTT 75241 Query 1455908 TTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGG 1455967 || ||||||| || || ||||| ||||||||| | || ||||| |||| Sbjct 75242 TT-TCGCCGCGTCGGACGGAATCGTCAACGAGAACCTCGTCGAGCGCTTCTGCGGCGAGG 75300 Query 1455968 TCCA-ATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCAC 1456026 |||| |||| ||||||| || ||||| ||||||||| || || ||||||||| Sbjct 75301 TCCAGATTG-CAGAGGCCAAGACCTTCTACGGCTTCCAGATCATGATGGAGAACATCCAC 75359 Query 1456027 TCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCAC 1456086 || || ||||||||||| || |||||||||||| || ||| | | | | || Sbjct 75360 TCGGAGACCTACTCGCTTCTCATCGACACCTACATCCGCGACACTGCCCGCCGCCAGTAC 75419 Query 1456087 CTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAG 1456146 ||||| |||||||| || | || | | | ||| ||||||||||||||| | Sbjct 75420 CTCTTCAAGGCCATCGAGACTATTCCCTGCATTAAGAAGAAGGCCGACTGGGCGCTCCGC 75479 Query 1456147 TGGATCAACAAGGA--GGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCG-CGT 1456203 ||||||| | | || | | ||| || |||||||| ||| | | |||||| | ||| Sbjct 75480 TGGATCACCGACGAACAGTCGTCG----TTCGCCGAGCGTCTCATTGCCTTTGCTGCCGT 75535 Query 1456204 CGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCT 1456263 |||||||||||| |||||||| ||| | ||||||| |||||||||||||| ||||| Sbjct 75536 CGAGGGCATCTTCTTCTCGGGGTCGTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGCCT 75595 Query 1456264 CATGCCCGGTCT 1456275 ||||||||| || Sbjct 75596 CATGCCCGGACT 75607 Score = 192 bits (212), Expect = 8e-43 Identities = 200/257 (78%), Gaps = 8/257 (3%) Strand=Plus/Plus Query 1456521 AGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGG 1456580 |||| ||| ||||||||| |||| ||| | ||||| ||| |||| | ||||| || Sbjct 75715 AGATTATCAAGGAGGCCGTCAAGATTGAGCAGGAGTTCCTCACCGAGGCCCTGCCTGTCT 75774 Query 1456581 CGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCG 1456640 ||||||||||||||||||||| | ||||||||||||||||||| | |||||||||||||| Sbjct 75775 CGCTCATCGGCATGAACGCCAAC-CTCATGTGCCAGTACATTG-AGTTTGTCGCCGACCG 75832 Query 1456641 CCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGA 1456700 ||||||| || |||||| | |||||| ||| || ||||||| ||| | | Sbjct 75833 TCTGCTCGTCGCCCTCGGCAAC-GAGAAGATGTACAACTCGACCAACCCCTTCGACTTCA 75891 Query 1456701 TGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGTGGC---GAGTA 1456757 ||||| |||||||||| |||||||| ||||||||||||| | |||||| | | || Sbjct 75892 TGGAGATGATCTCGCTGCAGGGCAAGGCCAACTTTTTCGA--GTCGCGTGTCTCGGCATA 75949 Query 1456758 CGCCAAGGCCGGCGTCA 1456774 ||||||| | || |||| Sbjct 75950 CGCCAAGTCGGGTGTCA 75966 >seq3 Length=3131490 Score = 170 bits (188), Expect = 3e-36 Identities = 276/395 (70%), Gaps = 19/395 (5%) Strand=Plus/Plus Query 259790 GTCGTCGAGCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCC 259849 |||| |||||| |||||| | ||| ||||||||||| | |||| ||| | Sbjct 1591906 GTCGCCGAGCGTCCCCAGCACATGATCATGCGTGTCTCGATTGG----TAT--------C 1591953 Query 259850 GACGTCGACAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGTTG 259909 ||| |||||| | || | || | | |||||| | ||||||| ||| | Sbjct 1591954 CACGGCGACAACA---TTGACAAGGTCATTGAGACCTACAACCTCATGTCGGAGCGTTAC 1592010 Query 259910 TTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCG 259969 |||||| || | || || ||||| || ||||| || || | ||| |||| |||||| Sbjct 1592011 TTCACCCACGCCTCCCCTACCCTCTTCAACGCCGGTACCCCCCACCCCCAGATGTCGTCG 1592070 Query 259970 TGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAG 260029 ||||| || | | |||||||| || ||||| || |||||||| ||||| |||||| Sbjct 1592071 TGCTTCCTTGTCGCCATGAAGGATGACTCGATTGACGGCATCTACGACACCCTCAAGACC 1592130 Query 260030 TGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCA--CACAAGGTGCGCG 260087 ||||| | ||||||||| | |||||||| || ||| | || || ||||| | || | Sbjct 1592131 TGCGCCCAGATCTCCAAGACTGCCGGCGGTATTGGTCT--CCACATTCACAACATTCGTG 1592188 Query 260088 CCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTC 260147 | |||| | ||| | || |||||||||||| | || ||||| |||| |||||||| | Sbjct 1592189 CTAAGGGCTCGTACATTGCTGGCACCAACGGCTATTCGAACGGTATTGTTCCCATGCTCC 1592248 Query 260148 GCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 ||| | ||| ||| || || || ||||||||| Sbjct 1592249 GCGCCTACGACGCCACTGCCCGTTATGTCGACCAG 1592283 Score = 152 bits (168), Expect = 7e-31 Identities = 181/244 (74%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 |||||||| | ||||||||||| ||||||||||| |||||| |||| | ||| Sbjct 2145523 TACTCGTCGTACATCTACAAGGTCCTCAAGCAGGTCCACCCCGACACCGGT-----ATC- 2145470 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||||||||| ||||| | || | ||||||||||| |||||| |||| || |||| Sbjct 2145469 TCCAACAAGGCCATGGCCATTCTCAACTCGTTTGTTTCCGACATCTTCGAGCGTATCGCT 2145410 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 |||||||| || ||| || |||| | ||| || ||| ||||||||||| Sbjct 2145409 ACCGAGGCTTCCAAGCTCGCGTCCTACAACCACCGCTCGACCATCTCGTCGCGCGAGATC 2145350 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 ||||||||||| || || ||| | | ||| || || ||| ||||||| ||||||||||| Sbjct 2145349 CAGACCGCCGTCCGTCTCATCCTCCCCGGTGAGCTTTCCAAGCACGCCATCTCCGAGGGC 2145290 Query 725139 ACCA 725142 |||| Sbjct 2145289 ACCA 2145286 Score = 143 bits (158), Expect = 4e-28 Identities = 319/482 (66%), Gaps = 12/482 (2%) Strand=Plus/Plus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 || ||| ||||||| || ||||||||| |||||| || || |||||||||||| || Sbjct 1592284 GGTGGCAACAAGCGCCCTGGTGCCTTTGCCATCTACCTCGAGCCCTGGCACGCCGACGTC 1592343 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 || ||| || ||||| |||||||||||||| ||||| || | || || Sbjct 1592344 TTCGACTTCCTCGACCTTCGCAAGAACCACGGCAA-GGAGGAGG-----TTCGTGCCCGT 1592397 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGC 261967 || ||||| |||| ||| |||| | |||||| || |||||||| | | | ||| | | Sbjct 1592398 GACCTCTTCTACGCCCTCTGGATCTCCGACCTCTTCATGCGCCGTGTCGAGGCCGACGGT 1592457 Query 261968 GACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCGGCC 262027 |||||| | ||| | ||||| ||||| |||||||| ||| | | | || Sbjct 1592458 GACTGGACCCTCATGTGCCCCGCCGAGTGCCCCGGCCTTTCCGACGTCCACTCGGAGGAG 1592517 Query 262028 TTTGACGCCCTCTATGAG--NNNNNNNNNNNNNNNNNNNNNNCGC-GGACCGTCGTGCCC 262084 ||||| |||||||| ||| ||| |||| || | Sbjct 1592518 TTTGAGGCCCTCTACGAGAAGTACGAGCGTGAGGGCAAGGGTCGCAAGACCATCAAG--- 1592574 Query 262085 GCACGACAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATG 262144 || | || | |||| ||||| ||| |||||| | |||||| || |||| |||| Sbjct 1592575 GCTCAGAAGCTTTGGTTCGCCATCCTCGAGGCCCAGACCGAGACTGGTGGCCCCTTCATG 1592634 Query 262145 GTCTACAAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG 262204 ||||||||||||| | ||||| | ||||||||| |||| ||||||| | | Sbjct 1592635 CTCTACAAGGACGCTGCCAACCGCAAGTCAAACCAGCAGCACCTCGGCACCATCAAGTCG 1592694 Query 262205 GCCAACCTGTGCACCGAGATCGTCCAGTTTTCGTCGCCCACCGAGGCAAGTGTGTGCAAC 262264 ||||||| ||||| |||||| || ||| ||| | ||| ||||| || |||||| Sbjct 1592695 TCCAACCTCTGCACTGAGATCATCGAGTACTCGGCCCCCGACGAGGTCGCCGTCTGCAAC 1592754 Query 262265 CT 262266 || Sbjct 1592755 CT 1592756 Score = 131 bits (144), Expect = 2e-24 Identities = 361/543 (66%), Gaps = 18/543 (3%) Strand=Plus/Plus Query 262872 CGGCCGCTGGGACTGGGACGCACTGCGGGCGTCGGTTCGACAGCATGGCCTGCGCAACTC 262931 || || |||| ||||||||| || || | | | || ||||| || | |||||||| Sbjct 1593150 CGACCTCTGGAACTGGGACGAGCTTCGTGAGAAGATTTCCCAGCACGGTGTCCGCAACTC 1593209 Query 262932 GTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGC 262991 | | ||||| || | ||||||||| ||| |||| ||||||||||| ||| | |||| Sbjct 1593210 GCTCCTCGTTGCCCCCATGCCCACTGCCTCGACCTCGCAGATCCTTGGCTGGAACGAGTG 1593269 Query 262992 GTTCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGT 263051 |||||| | ||| | ||||| |||| || || |||||||| ||||| | Sbjct 1593270 CTTCGAGCCCTACACTTCGATGCTCTACTCGCGTCGTGTCCTCTCGGGTGACTT---CCA 1593326 Query 263052 GGTCAACCGCCACCTGG-TCAAGCG---CATGGTGGCGCGCGGCCTGTGG-ACGCCCGAC 263106 |||| | ||| ||||| || || | | | | || || ||| ||| | Sbjct 1593327 GGTCGTCTGCC-CCTGGCTCCTCCGTGACCTCATTAACCTTGGTCTCTGGGACGACGAGA 1593385 Query 263107 TTTCGCGACCGGCTCATTGCGGCACAGGGCTCGGTGCAGGGCTTTGACGACGAGGAGGTG 263166 | || | | ||||||| | |||||| | ||| | || || || Sbjct 1593386 TGAAGCAGCTCG-TCATTGCCTCGGGTGGCTCGATCCAGCACATTCCCG-----GAATCC 1593439 Query 263167 CCGCCCGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATT 263226 ||| | || ||||| | ||| ||||||||| |||||| | | | || |||| Sbjct 1593440 CCGAC-GACATCAAGTCCATCTACAAGACCGTCTGGGAGATTTCACAGAAGGCCGTCATT 1593498 Query 263227 GATATGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTC 263286 || | || |||||||| | ||| |||| ||| |||||||||||| | ||||| Sbjct 1593499 GACCTTGCTGCCGACCGTGGAGCCTTCATCGATCAGTCGCAGTCGCTCAACATCCACCTC 1593558 Query 263287 GCCGACCCGACGGCCGAG-AGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCT 263345 ||| |||| || | ||| |||| ||||||||| ||| | ||| ||||| || Sbjct 1593559 GCCAACCCCTCGTTCTCCCAGC-TCACCTCGATGCACTTCTACGGCTGGAAGCGCGGACT 1593617 Query 263346 CAAGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGT 263405 ||||||||| || ||||| || |||||||| ||| | ||||||||||| || ||||| || Sbjct 1593618 CAAGACTGGTATCTACTACCTCCGCACCCGCCCCTCGGCCAACGCCATCCAGTTCACTGT 1593677 Query 263406 CGA 263408 ||| Sbjct 1593678 CGA 1593680 >seq8 Length=2114789 Score = 143 bits (158), Expect = 4e-28 Identities = 179/244 (73%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 |||||||| | ||||||||||| ||||||||||| |||||| || | | ||| Sbjct 1119448 TACTCGTCGTACATCTACAAGGTCCTCAAGCAGGTCCACCCCGACACTGGT-----ATC- 1119501 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||||||||| ||||| | ||| | |||||||| ||| ||||| |||| || |||| | Sbjct 1119502 TCCAACAAGGCCATGGCCATCCTCAACTCGTTCGTCTCGGACATTTTCGAGCGTATCGCC 1119561 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 ||||||||| || || || |||| | ||| ||| || | ||||||||| Sbjct 1119562 ACCGAGGCCTCCAAGCTTGCTTCCTACAACCACCGCTCCACCATTTCGTCTCGCGAGATC 1119621 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 ||||||||||| || || ||| | | ||| || || | | ||||||| ||||||||||| Sbjct 1119622 CAGACCGCCGTCCGTCTCATCCTCCCCGGTGAGCTCTCGAAGCACGCCATCTCCGAGGGC 1119681 Query 725139 ACCA 725142 |||| Sbjct 1119682 ACCA 1119685 >seq1 Length=5305799 Score = 107 bits (118), Expect = 3e-17 Identities = 105/133 (79%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 1456608 ATGTGCCAGTACATTGAATTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGA 1456667 |||||||||||||| || ||| |||||||||||||| ||| ||||||||||| || | | Sbjct 776099 ATGTGCCAGTACATGGAGTTT-GTCGCCGACCGCCTCGTCGTGGCGCTCGGCTACG-ATA 776042 Query 1456668 AGCACTACCGGACGGCCAACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGA 1456727 || ||| || | ||||||||| ||||||||| | ||||| || | |||||| Sbjct 776041 AGATCTATAACGCGACGAACCCGTTCGACTGGATGGAGCTCATCTCTCTGCAAGGCAAGG 775982 Query 1456728 CCAACTTTTTCGA 1456740 ||||||||||||| Sbjct 775981 CCAACTTTTTCGA 775969 Score = 86.0 bits (94), Expect = 9e-11 Identities = 189/281 (67%), Gaps = 2/281 (1%) Strand=Plus/Plus Query 1818059 GAGGTCGCCCATGGTAAAGGGCGTCACGCGCTCGGGAAAGGTGAGCGTCTTGACGATCTC 1818118 ||||| | | ||| | | || || ||||||||||| |||| || || || |||| Sbjct 2656672 GAGGTAGACAATGTTGTACGGGGTGACGCGCTCGGGGTAGGTAAGGATCATGGCGATACT 2656731 Query 1818119 ATAGGGCACGCCCACCTCGTCAATGTCAATCTCGGGGTCGGGGCTGATGACGGCGCGCGC 1818178 ||| ||||| |||| ||| | | || | |||||| | | ||||||| || || Sbjct 2656732 GCGGGGAACGCCGACCTGGTCGAGCTGGATGTTGGGGTCACCGGTAATGACGGTACGGGC 2656791 Query 1818179 GGTAAAGTTGACGCGCTTGCCCATGCAATTGCCGCGGATCCTGCCCTCCTTGCCCTTGAA 1818238 | |||| ||| |||||||||||| || || |||| | |||||||||||||| | Sbjct 2656792 CGAGAAGTCGACACGCTTGCCCATGAGGTTACCACGGAGACGACCCTCCTTGCCCTTCAG 2656851 Query 1818239 CCGCTCCACG-AGGCCCTTGGTGGGCTTGCCCGACCGTTGGGTCGACTGCTTTTGGCCGC 1818297 ||| |||| | | ||||| ||| ||||||| ||| | ||| ||| Sbjct 2656852 ACGC-GCACGAATGGCCTTGACGGGACGGCCCGACTTTTGCAAAGCCTGGGGGATACCGG 2656910 Query 1818298 GGATGTCGTTGTTGTGGTAGGTGGCCACCTCGACCTGGAGG 1818338 |||||||||| ||||||||| || | || ||||||| Sbjct 2656911 CAATGTCGTTGTCCATGTAGGTGGCGACGTGGAACTGGAGG 2656951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177808692252212