Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq6 98.7 9e-16 seq5 82.4 7e-11 >seq6 Length=2644601 Score = 98.7 bits (108), Expect = 9e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| || | | || || | || || |||||||| || ||||| Sbjct 27580 CTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCCTCGAGCTGCTTTCCGGCAAA 27521 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | || | || |||||||||| |||||| ||| | || Sbjct 27520 GATAAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGA-CGT 27462 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | ||||| ||| || ||||| | ||||| || || || |||| ||| || | Sbjct 27461 TGTCAATGGTGTCCGACGACTCGACCTCAAGGGTGATGGTCTTGCCGGTCAGAGTCTTGA 27402 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 27401 CGAAAATCTGCAT 27389 Score = 86.0 bits (94), Expect = 6e-12 Identities = 122/169 (72%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| | ||| || |||| || |||||||| || || || Sbjct 27352 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAA 27293 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | |||| || |||||||||| |||||| ||| | || Sbjct 27292 AATAAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 27234 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712 || | | ||||| || || ||||| | ||||| || || ||||| Sbjct 27233 TGTCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGT 27185 >seq5 Length=2819049 Score = 82.4 bits (90), Expect = 7e-11 Identities = 121/169 (72%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | ||| || |||| || |||||||| || || || Sbjct 1774683 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 1774624 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | || | || |||||||||| |||||| ||| | || Sbjct 1774623 GATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 1774565 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712 || | | ||||| || |||||||| | ||||| || || ||||| Sbjct 1774564 TGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGT 1774516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450793453492080