Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1 100 4e-16 seq6 96.9 5e-15 >seq1 Length=5305799 Score = 100 bits (110), Expect = 4e-16 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 39659 TCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA 39718 ||||| || || |||||||| |||| | ||||||||| |||||||| || ||||| ||| Sbjct 776313 TCGTTTGAGAAGGTGAGTCCGCGCATCAAACCACGCTTCTTGAGCCAGAAGATGGCGGCA 776372 Query 39719 AAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAA 39761 || ||||| ||||||||||||||||| || ||||| |||| Sbjct 776373 AACGATCCCGAAAAGAAGATGCCTTCAACGCACGCAAACGCAA 776415 >seq6 Length=2644601 Score = 96.9 bits (106), Expect = 5e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||| ||||| || || ||||| || | || | ||||| || |||||||| Sbjct 75665 GCAGGCAAAGTCGGTGTGGAGACCCTCGTCGCGCGAGATGAGCTCGTTCGAGAATGTGAG 75606 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 ||| ||||| || |||||||| |||||||| || |||| || || || || || ||||| Sbjct 75605 TCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCGAACGACCCCGAGAAGAA 75546 Query 39736 GATGCCTTCTACTGCTGCAAATGCAA 39761 |||||| || || || ||||| |||| Sbjct 75545 GATGCCCTCGACGGCAGCAAAGGCAA 75520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908576754640