Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 8e-16 seq5 82.4 6e-11 >seq1 Length=5305799 Score = 98.7 bits (108), Expect = 8e-16 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 44138 GCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTA 44197 |||||||| || |||||||| |||||||| ||||||||||| ||||| || ||| | Sbjct 776413 GCGTTTGCGTGCGTTGAAGGCATCTTCTTTTCGGGATCGTTTGCCGCCATCTTCTGGCTC 776354 Query 44198 AAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAA 44257 ||||| || |||||||||| || | || || ||||| ||| | ||| || || ||| Sbjct 776353 AAGAAGCGTGGTTTGATGCGCGGACTCACCTTCTCAAACGAGCTCATATCCCGCGACGAA 776294 Query 44258 GGCTTACATTGCGATTTTGCTTGCTTG 44284 ||| |||| || ||||| || ||| Sbjct 776293 GGCATACACACGGACTTTGCGTGTTTG 776267 >seq5 Length=2819049 Score = 82.4 bits (90), Expect = 6e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 115032 ATGGTCATACGTGAAGGAAAAGCATGCGGATTAATAATCAAGTCTGGCACTAACCCGTCG 115091 ||||||||||| || |||| || ||||| || || || | ||| ||||| | || ||| Sbjct 1849435 ATGGTCATACGCGACGGAATGGCGTGCGGGTTGATGATAATGTCCGGCACAATGCCCTCG 1849376 Query 115092 GCTGTGAACGGCATGTCGTGCTGATCGTACATCATTCCACAAGTTCCTTTTTGAGCGGTA 115151 || |||||||||||||| | ||| |||| | || ||| || || || || || | Sbjct 1849375 GCCGTGAACGGCATGTCCTCCTGGCGGTACGTGATACCAATGGTACCCTTCTGTCCGTGA 1849316 Query 115152 AACGATGCAAATTTATCACCAATCT 115176 ||| ||||| || || ||||||| Sbjct 1849315 CGCGACGCAAACTTGTCGCCAATCT 1849291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455874056130