Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3 203 4e-47 seq6 114 2e-20 seq1 82.4 1e-10 >seq3 Length=3131490 Score = 203 bits (224), Expect = 4e-47 Identities = 679/1046 (65%), Gaps = 27/1046 (3%) Strand=Plus/Minus Query 111053 TCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCA 111112 || || ||||| || ||||| | ||| | || | ||| ||||| || || || | || Sbjct 1592951 TCGGCAAGACCCTGGACACCGAGACCGACGGGGCGGTGGCGCATGTTCGAGTTCCTGGC- 1592893 Query 111113 GTCTC---AACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATC 111169 ||| |||||| || | || | ||||| || || || |||||||||| | Sbjct 1592892 --CTCGGGAACGGGGTAGTAGTTGCGCGAGATGACAGCGTCGAGGTTCTTGGTAACAACC 1592835 Query 111170 TTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTT 111229 || ||||| || ||||| || | | || | |||| |||| | |||| | Sbjct 1592834 TTGGTGATCTCGTGAAGCTTCTTGAAGTCGTAGGTGCCGTTCTCAAAGTCGACAAAGGCA 1592775 Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 || ||||| | || || | ||||| || || ||| || | | |||||| | Sbjct 1592774 GGGAGGGCAAGGGAGGCAAGGTTGCAGACGGCGACCTCGTCGGGGGCCGAGTACTCGATG 1592715 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 || || || || | |||||| ||| || || || | | || ||||| ||| | Sbjct 1592714 ATCTCAGTGCAGAGGTTGGACGACTTGATGGTGCCGAGGTGCTGCTGGTTTGACTTGCGG 1592655 Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409 ||| || ||||||||||||||| |||| || ||||| ||||| | | ||| || Sbjct 1592654 TTGGCAGCGTCCTTGTAGAGCATGAAGGGGCCACCAGTCTCGGTCTGGGCCTCGAGGATG 1592595 Query 111410 GCCTTCCAAA-CATCGGCGGCTGGTACAATGGCGTTGG--CCCGT-CCCTCCGCCTCGTA 111465 || ||||| | || | | || | |||| ||| ||| | ||||| |||||| Sbjct 1592594 GCGAACCAAAGCTTCTGAGCCTTG----ATGGTCTTGCGACCCTTGCCCTCACGCTCGTA 1592539 Query 111466 CTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCG--CGTCGGAGAGACCTGGTGCCTTG 111523 ||| ||||||||| ||||||||||| | | | ||||||| || || || || | Sbjct 1592538 CTTCTCGTAGAGGGCCTCAAACTCCTC--CGAGTGGACGTCGGAAAGGCCGGGGCACTCG 1592481 Query 111524 TCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGA 111583 | || || | || | ||| | ||| | |||| || || |||||| ||||| | Sbjct 1592480 GCGGGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGGCGCATGAAGAGGTCGGAG 1592421 Query 111584 ATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT 111643 ||||| |||| | ||||| || | ||| |||| || | || ||||| || Sbjct 1592420 ATCCAGAGGGCGTAGAAGAGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGA 1592361 Query 111644 AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC- 111702 | || ||||| || | || || |||||||| ||||| || |||| || | | || Sbjct 1592360 AGGTCGAGGAAGTCGAAGACGTCGGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCA 1592301 Query 111703 ---CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCAT 111759 | | | ||| | | || | ||||| || || ||||||| | |||| ||||| Sbjct 1592300 GGGCGCTTGTTGCC-ACCCTGGTCGACATAACGGGCAGTGGCGTCGTAGGCGCGGAGCAT 1592242 Query 111760 TGGAATAATACCATCTGATTGACCATTTGTCCCCCGAAT--ACGAGATTTATTGGCTCTC 111817 |||| |||||| | || | || || || || ||| ||||| | | || | Sbjct 1592241 GGGAACAATACCGTTCGAATAGCCGTTGGTGCCAGCAATGTACGAGCCCT--TAGCACGA 1592184 Query 111818 ACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTA 111877 | | || ||||| | |||||||| || || ||| ||||| || || || | | Sbjct 1592183 ATGTTGTGAATGTGGAGACCAATACCGCCGGCAGTCTTGGAGATCTGGGCGCAGGTCTTG 1592124 Query 111878 AGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGAC 111937 || || | ||||| |||| || ||||| ||||| |||||| ||||||||| ||| Sbjct 1592123 AGGGTGTCGTAGATGCCGTCAATCGAGTCATCCTTCATGGCGACAAGGAAGCACGACGAC 1592064 Query 111938 ATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT 111997 ||||| || || ||||| || ||||||||||| || | ||||| |||| || Sbjct 1592063 ATCTGGGGGTGGGGGGTACCGGCGTTGAAGAGGGTAGGGGAGGCGTGGGTGAAGTAACGC 1592004 Query 111998 TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATT 112057 | ||||| || ||| ||||| | ||| ||||||| || |||||||| || || Sbjct 1592003 TCCGACATGAGGTTGTAGGTCTCAATGACCTTGTCAATGTTGTCGCCGTGGATACCAATC 1591944 Query 112058 GCGACCCGCATGAACATGTACTGTGG 112083 | ||| ||||||| ||||| ||| || Sbjct 1591943 GAGACACGCATGATCATGTGCTGGGG 1591918 >seq6 Length=2644601 Score = 114 bits (126), Expect = 2e-20 Identities = 279/416 (67%), Gaps = 10/416 (2%) Strand=Plus/Minus Query 122481 GAGGAGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGAT 122540 ||| ||||| || | ||| |||||||||||| | |||| | | |||||| ||||| Sbjct 75839 GAGCAGACGGTCGGCGACAAACTCAATGTACTGGCACATGAGGTTGGCGTTCATGCCGAT 75780 Query 122541 GAG-GTTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCA 122599 ||| | ||| || || || || || |||| | | |||||||| || ||||| || | Sbjct 75779 GAGCGAGACA-GGCAGGGCCTCGGTGAGGAACTCCTGCTCAATCTTGACGGCCTCCTTGA 75721 Query 122600 CGATGGCGTGGATAGTTTCGGTAGTGGGT-CTATTACGCAAAGTCTTGAAGAGCTCCACG 122658 || || |||| | |||| |||||| | || | ||||| | Sbjct 75720 TAATCTTGTTGATAATGTCGGG-GTGGGTGCGGCGGCGGAGGTGGCCAAAGAGGAGGCAG 75662 Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || |||||||||||| || || || || || || || ||||| || || Sbjct 75661 GCAAAGTCGGTGTGGAGACCCTCGTCGCGCGAGATGAGCTCGTTCGAGAATGTGAGTCCG 75602 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 |||||||| || |||||||| | ||| | || | | ||| ||||| ||||||||||| Sbjct 75601 GGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCGAACGACCCCGAGAAGAAGATG 75542 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATC---A 122835 ||||| || ||||| |||| || || |||||||| || |||| | | || Sbjct 75541 CCCTCGACGGCAGCAAAGGCAATGAGACGCTCGGCGAACGA---CGACTGTTCGTCGGTG 75485 Query 122836 AACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 | ||| | ||||| | |||||||||| ||| || || | ||| | |||||| Sbjct 75484 ATCCAGCGGAGCGCCCAGTCGGCCTTCTTCTTAATGCAGGGAATAGTCTCGATGGC 75429 Score = 104 bits (114), Expect = 3e-17 Identities = 216/320 (68%), Gaps = 4/320 (1%) Strand=Plus/Plus Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 11689 || |||||||| || | ||||| || || || || | | ||| | | ||||| Sbjct 1387506 GCGTCAATCTCGTCGACGAAGATGATGCAGGGGGCGTTCTTCCTGGCAGTGGCGAAGAGG 1387565 Query 11690 TCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCAC 11749 || || || | || ||| ||||| || |||||||| || || | | | || | Sbjct 1387566 TCACGGACACGCGAGGGACCGACACCGACGAACATCTCAACGAACTCGGAACCGGAAACC 1387625 Query 11750 TGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTA 11809 | ||| ||||| || | || || ||| |||| ||||||||||||||| |||||| Sbjct 1387626 GAAAGGAAGGGGACCTTGGCCTCGCCGGCGGTGGCCTTGGCGAGGAGGGTCTTACCCGTA 1387685 Query 11810 CCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC--ACTTCCAAAATATC 11867 || || ||| | ||||| ||| || ||||||||||||||||| |||| || Sbjct 1387686 CCGGGGGGACCAGAGAGAATGGCACCACGGGGGATCTTGGCACCGAGCTTC--TCGTACT 1387743 Query 11868 TCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGCCGCGTCAATCC 11927 | |||| | |||||| || | |||| ||| || || || |||||| |||| || | Sbjct 1387744 TTGCGGGCTCCTTGAGGAACTTGACAAACTCCATAATCTCCTCCTTGGCCTCGTCCATAC 1387803 Query 11928 CCTCAACATCACTGAAGCGG 11947 | | || |||| ||||||| Sbjct 1387804 CGGCGACGTCACGGAAGCGG 1387823 >seq1 Length=5305799 Score = 82.4 bits (90), Expect = 1e-10 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| ||| ||| | || || || ||||| || || || ||||||||| || || Sbjct 776274 GCAAAGTCCGTGTGTATGCCTTCGTCGCGGGATATGAGCTCGTTTGAGAAGGTGAGTCCG 776333 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 |||| | ||| |||||||| | ||| | || ||| || || || || |||||||| Sbjct 776334 CGCATCAAACCACGCTTCTTGAGCCAGAAGATGGCGGCAAACGATCCCGAAAAGAAGATG 776393 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGT 122808 || || || ||||||||||||| || ||| Sbjct 776394 CCTTCAACGCACGCAAACGCAATGAGACGT 776423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031795889600