Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq3 266 4e-66 seq6 116 5e-21 >seq3 Length=3131490 Score = 266 bits (294), Expect = 4e-66 Identities = 1116/1745 (64%), Gaps = 45/1745 (3%) Strand=Plus/Minus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 ||||||||||| || || |||||||| || |||||||| | || | ||||| |||| Sbjct 1593641 CGGAGGTAGTAGATACCAGTCTTGAGTCCGCGCTTCCAGCCGTAGAAGTGCATCGAGGTG 1593582 Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 117956 | || ||||| | || | | | | || ||| | || || |||||||||||| Sbjct 1593581 AGCTGGGAGAACGAGGGGTTGGCGAGGTGGATGTTGAGCGACTGCGACTGATCGATGAAG 1593522 Query 117957 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTG 118016 ||| || || || || | ||||| || ||||| || ||||| || ||| || Sbjct 1593521 GCTCCACGGTCGGCAGCAAGGTCAATGACGGCCTTCTGTGAAATCTCCCAGACGGTCTTG 1593462 Query 118017 TAGAGGTTCTTAATATCATCTGGGATATCCACGA-TATTTTGGATGGATCCACCCG---C 118072 |||| | ||| || || || ||||| ||| || | | ||||| || ||||||| | Sbjct 1593461 TAGATGGACTTGATGTCGTCGGGGAT-TCCGGGAATGTGCTGGATCGAGCCACCCGAGGC 1593403 Query 118073 CTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCAC 118132 |||| ||| | |||||| || | ||||||||||| || |||| || | Sbjct 1593402 AATGAC---GAGCTGCTTCATCTCGTCGTCCCAGAGACCAAGGTTAATGAGGTCACGGAG 1593346 Query 118133 GAG--ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTG 118190 ||| | | | ||| || || ||||||| |||| || | | |||| | Sbjct 1593345 GAGCCAGGGGCA--GACGACCTGGAAGTCACCCGAGAGGACACGACGCGAGTAGAGCATC 1593288 Query 118191 GTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGC 118250 | ||||| ||||| |||||||| || || | ||| || | || ||||| |||||| Sbjct 1593287 GAAGTGTAGGGCTCGAAGCACTCGTTCCAGCCAAGGATCTGCGAGGTCGAGGCAGTGGGC 1593228 Query 118251 ATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCG 118310 ||||| || | ||| || ||| |||| ||| | | ||| || || || Sbjct 1593227 ATGGGGGCAACGAGGAGCGAGTTGCGGACACCGTGCTGGGAAATCTTCTCACGAAGCTCG 1593168 Query 118311 TCCCAGT--CGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTT 118368 ||||||| | || | | | | | || ||| | || |||||||| | || | Sbjct 1593167 TCCCAGTTCCAGAGGTCGGTGGGGACACGGCC--CCAGAGGTCGAACTGGAGCTTGCCCT 1593110 Query 118369 GGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGC 118428 || ||||| ||||| | | || |||| | | |||| ||| | Sbjct 1593109 CAGAAATGGGCGAGCCCTCGTACGAAGGGTACTTGCCCATCTCGACGGCCATCTCGCACG 1593050 Query 118429 TCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCAT-TGCCTTGGCC 118487 || |||||| || ||||| || || || || || || | || | || | | | Sbjct 1593049 ACGACTCGAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGGAGGTTGAGCTGGCGAG-CA 1592991 Query 118488 TCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCG 118547 ||| || || || | | ||| || || | || || ||||| ||||||||| Sbjct 1592990 TCGGGCGAGTCGAAGGGCATGCGGAGGGCCATGAAGGCGTCGGCAAGACCCTGGACACCG 1592931 Query 118548 AGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCC---ACGGGATAAAAA 118604 || || | ||||| || | ||| || || |||| || ||| ||||| || | Sbjct 1592930 AGACCGACGGGGCGGTGGCGCATGTTCGAGTTCCTGGC---CTCGGGAACGGGGTAGTAG 1592874 Query 118605 TTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTT 118664 || | ||| || | || || ||||| |||||||| ||||| || |||||||| Sbjct 1592873 TTGCGCGAGATGACAGCGTCGAGGTTCTTGGTAACAACCTTGGTGATCTCGTGAAGCTTC 1592814 Query 118665 TCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGA 118724 | | | || | ||| |||| | |||| | ||| ||||| | || || || Sbjct 1592813 TTGAAGTCGTAGGTGCCGTTCTCAAAGTCGACAAAGGCAGGGAGGGCAAGGGAGGCAAGG 1592754 Query 118725 TTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAA 118784 || || || | | ||| || | | |||||| || || || ||||| | ||| || Sbjct 1592753 TTGCAGACGGCGACCTCGTCGGGGGCCGAGTACTCGATGATCTCAGTGCAGAGGTTGGAC 1592694 Query 118785 CTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGC 118844 ||| |||||||| | || || || |||||||| ||| || |||||||| ||| Sbjct 1592693 GACTTGATGGTGCCGAGGTGCTGCTGGTTTGACTTGCGGTTGGCAGCGTCCTTGTAGAGC 1592634 Query 118845 ATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGC 118903 ||| | || || ||||| || |||| || ||| || || ||| | | || | | Sbjct 1592633 ATGAAGGGGCCACCAGTCTCGGTCTGGGCCTCGAGGATGGCGAACCAAAGCTTCTGAGCC 1592574 Query 118904 TGGCACAGTGGCGTTGGCTCGC---CCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAA 118960 | | ||| ||| | | ||||| ||||||||| ||||||||| ||||| Sbjct 1592573 TTGA----TGGTCTTGCGACCCTTGCCCTCACGCTCGTACTTCTCGTAGAGGGCCTCAAA 1592518 Query 118961 CTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTG 119020 ||| || | | || || || || || || | ||||| | ||| | ||| | Sbjct 1592517 CTCCTCCGAGTGGACGTCGGAAAGGCCGGGGCACTCGGCGGGGCACATGAGGGTCCAGTC 1592458 Query 119021 ACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATC 119080 ||| | |||| || || |||||||||||| | ||||||||| || ||||||| || Sbjct 1592457 ACCGTCGGCCTCGACACGGCGCATGAAGAGGTCGGAGATCCAGAGGGCGTAGAAGAGGTC 1592398 Query 119081 CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATC 119140 || ||| | || || | || || || || | || | ||||| | || || Sbjct 1592397 ACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGAAGGTCGAGGAAGTCGAAGACGTC 1592338 Query 119141 CGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACGA------CCAGCCTG 119194 |||||||| || || ||||| | || | | || | | || ||| |||| Sbjct 1592337 GGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACC---AGGGCGCTTGTTGCCACCCTG 1592281 Query 119195 GTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTG 119254 || ||||| | |||||||||| | | || ||||| |||| ||||| | || | Sbjct 1592280 GTCGACATAACGGGCAGTGGCGTCGTAGGCGCGGAGCATGGGAACAATACCGTTCGAATA 1592221 Query 119255 GCCATTTGTCCCCCGAAT--ACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCA 119312 ||| || || || ||| ||||| | | | || | | | ||| ||||| | |||| Sbjct 1592220 GCCGTTGGTGCCAGCAATGTACGAGCCCT--TAGCACGAATGTTGTGAATGTGGAGACCA 1592163 Query 119313 ATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCG 119372 ||||| || || ||| ||||| || ||||| | |||| || ||||||| || || Sbjct 1592162 ATACCGCCGGCAGTCTTGGAGATCTGGGCGCAGGTCTTGAGGGTGTCGTAGATGCCGTCA 1592103 Query 119373 ATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCA 119432 ||||||||| |||| | |||| |||||||| |||||| || || ||| ||||| Sbjct 1592102 ATCGAGTCATCCTTCATGGCGACAAGGAAGCACGACGACATCTGGGGGTGGGGGGTACCG 1592043 Query 119433 GCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTGTCGTAGGTC 119492 ||||||||||| || || | |||||| |||| || | ||||| || ||||||| Sbjct 1592042 GCGTTGAAGAGGGTAGGGGAGGCGTGGGTGAAGTAACGCTCCGACATGAGGTTGTAGGTC 1591983 Query 119493 TCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTAT 119552 || | ||| | ||||| || ||||| ||||| |||||||| ||||| | ||||| Sbjct 1591982 TCAATGACCTTGTCAATGTTGTCGCCGTGGATACCAATCGAGACACGCATGATCATGTGC 1591923 Query 119553 TGGGG 119557 ||||| Sbjct 1591922 TGGGG 1591918 >seq6 Length=2644601 Score = 116 bits (128), Expect = 5e-21 Identities = 272/409 (67%), Gaps = 5/409 (1%) Strand=Plus/Plus Query 14062 ACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGC 14121 ||| || || || || || || | || ||| ||| |||| ||| ||||| || | Sbjct 1387322 ACGGTCGAAACGGCCGGGACGCATAAGAGCGGGGTCGAGGACATCGGGACGGTTGGTACC 1387381 Query 14122 CGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATT 14181 |||| ||||||||| | || | | ||||| ||||||||| | || || || Sbjct 1387382 GGCGAGAACAACGATGTGCTCCTTGCTGCTGAAGCCGTCCATCTCAACGAGAAGCTGGTT 1387441 Query 14182 GATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCACCCGCACTG----CGTTGCTTAC 14237 || ||| || || || || || | | || || |||| || || ||| | Sbjct 1387442 GAGGGTCGACTCCCGCTCGTCGTTTCC-GCCAAACTGTCCGCCCTTGCCACGGGCCTTTC 1387500 Query 14238 CGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCAA 14297 ||| ||||||||| || |||| ||| | ||| || || || | | |||| | | Sbjct 1387501 CGATGGCGTCAATCTCGTCGACGAAGATGATGCAGGGGGCGTTCTTCCTGGCAGTGGCGA 1387560 Query 14298 AGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGG 14357 ||| || || || | | || ||||||||| || |||||||| || || | || ||| Sbjct 1387561 AGAGGTCACGGACACGCGAGGGACCGACACCGACGAACATCTCAACGAACTCGGAACCGG 1387620 Query 14358 AACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCC 14417 || | ||||||||| || | || || ||| |||| ||||||||||||||| | Sbjct 1387621 AAACCGAAAGGAAGGGGACCTTGGCCTCGCCGGCGGTGGCCTTGGCGAGGAGGGTCTTAC 1387680 Query 14418 CCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 14466 |||| || || || | ||||| ||||||||| |||||| ||||||| Sbjct 1387681 CCGTACCGGGGGGACCAGAGAGAATGGCACCACGGGGGATCTTGGCACC 1387729 Score = 113 bits (124), Expect = 6e-20 Identities = 122/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || ||||||||||||||| || |||||||| || |||||||| || || Sbjct 75662 GGCAAAGTCGGTGTGGAGACCCTCGTCGCGCGAGATGAGCTCGTTCGAGAATGTGAGTCC 75603 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 |||||||| || |||||||| | |||||| || | || || || ||||||||||| Sbjct 75602 GGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCGAACGACCCCGAGAAGAAGAT 75543 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGA 130176 ||||| || || || |||| ||||||||| || || || Sbjct 75542 GCCCTCGACGGCAGCAAAGGCAATGAGACGCTCGGCGAACGA 75501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434999008560