Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq3 167 3e-36 seq6 118 1e-21 seq1 95.1 1e-14 >seq3 Length=3131490 Score = 167 bits (184), Expect = 3e-36 Identities = 675/1052 (64%), Gaps = 21/1052 (2%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||||| || | || ||||| || || || ||||||| ||| Sbjct 1591918 CCCCAGCACATGATCATGCGTGTCTCGATTGGTATCCACGGCGACAACATTGACAAGGTC 1591977 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 | ||||| ||| || ||||| | || |||| ||||| | || ||||||||| Sbjct 1591978 ATTGAGACCTACAACCTCATGTCGGAGCGTTACTTCACCCACGCCTCCCCTACCCTCTTC 1592037 Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401 || || ||||| || ||||| ||||| ||||||||| |||||| ||||| ||| Sbjct 1592038 AACGCCGGTACCCCCCACCCCCAGATGTCGTCGTGCTTCCTTGTCGCCATGAAGGATGAC 1592097 Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 104461 || || |||| ||||| | || || | | || || || ||||| ||| || || Sbjct 1592098 TCGATTGACGGCATCTACGACACCCTCAAGACCTGCGCCCAGATCTCCAAGACTGCCGGC 1592157 Query 104462 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGT--ATTCGGGGGACAA 104519 |||||||| | ||||| || | | | || | | ||||| ||| || || | Sbjct 1592158 GGTATTGGTCTCCACATTCACAACATTCGTGCTA--AGGGCTCGTACATTGCTGGCACCA 1592215 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | || | || | |||||| |||| ||||| |||| | ||||||| || || |||| Sbjct 1592216 ACGGCTATTCGAACGGTATTGTTCCCATGCTCCGCGCCTACGACGCCACTGCCCGTTATG 1592275 Query 104580 TAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAGCCATGGCAC 104635 | | || | | ||| | | | || | | || |||| || ||||| |||||| Sbjct 1592276 TCGACCAGGGT-GGCAACAAGCGCCCTGGTGCCTTTGCCATCTACCTCGAGCCCTGGCAC 1592334 Query 104636 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC 104695 || || || | || ||||| || | || ||||| || | ||||||| || | Sbjct 1592335 GCCGACGTCTTCGACTTCCTCGACCTTCGCAAGAACCACGGCAAGGAGGAGGTTCGTGCC 1592394 Query 104696 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 104755 || || ||||||| ||| |||||||| | || ||||||||| | || |||| Sbjct 1592395 CGTGACCTCTTCTACGCCCTCTGGATCTCCGACCTCTTCATGCGCCGTGTCGAGGCCGAC 1592454 Query 104756 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAG 104815 || | ||| | ||| | || || | | || || || || ||||| | | ||| Sbjct 1592455 GGTGACTGGACCCTCATGTGCCCCGCCGAGTGCCCCGGCCTTTCCGACGTCCACTCGGAG 1592514 Query 104816 GAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC--GACGGTGC 104873 |||||||| ||||| ||| ||||||||| | ||| | | | | || ||| | | Sbjct 1592515 GAGTTTGAGGCCCTCTACGAGAAGTACGAGCGTG-AGGGCAAGGGTC-GCAAGACCAT-C 1592571 Query 104874 CAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATAC 104932 || | || | | ||| || || ||| || | || |||||||||||| || | | Sbjct 1592572 AAGGCTCAGAAGCTTTGGTTCGCCATCCTCGAGGCCCAGACCGAGACTGGTGGCCCCTTC 1592631 Query 104933 ATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAG 104992 ||||| ||||| ||||| |||| ||| || || || | | || |||||| Sbjct 1592632 ATGCTCTACAAGGACGCTGCCAACCGCAAGTCAAACCAGCAGCACCTCGGCACCATCAAG 1592691 Query 104993 AGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGT 105052 ||||| ||||| || || ||| | || | | | | || ||| || || || Sbjct 1592692 TCGTCCAACCTCTGCACTGAGATCATCGAGTACTCGGCCCCCGACGAGGTCGCCGTCTGC 1592751 Query 105053 AACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTAT 105112 ||||| || || | || ||||| | ||| || |||| || | || | Sbjct 1592752 AACCTTGCCTCCCTTGCCCTCCCTGCCTTTGTCGACTTTGAGAACGGCACCTACGACTTC 1592811 Query 105113 GAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGA 105172 | || || ||||| | || || ||| ||||| ||||| || || || | Sbjct 1592812 AAGAAGCTTCACGAGATCACCAAGGTTGTTACCAAGAACCTCGACGCTGTCATCTCGCGC 1592871 Query 105173 AATTTTTACCCCGTT---GAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGT 105229 || | ||||||||| ||| || | || || || ||| | ||||| || | ||| Sbjct 1592872 AACTACTACCCCGTTCCCGAG---GCCAGGAACTCGAACATGCGCCACCGCCCCGTCGGT 1592928 Query 105230 CTCGGTGTTCAGGGTCTCGCGGATGTATTCAT 105261 |||||||| |||||||| || || | ||||| Sbjct 1592929 CTCGGTGTCCAGGGTCTTGCCGACGCCTTCAT 1592960 >seq6 Length=2644601 Score = 118 bits (130), Expect = 1e-21 Identities = 174/245 (71%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 94714 CTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 94773 ||||| | |||||| | || |||| || ||| | ||||| || || ||||| | Sbjct 75420 CTCTTCAAGGCCATCGAGACTATTCCCTGCATTAAGAAGAAGGCCGACTGGGCGCTCCGC 75479 Query 94774 TGGTTT---GATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTT 94830 ||| | || | ||||| || || || ||||| ||| | || ||||| || Sbjct 75480 TGGATCACCGACGAACAGTCG---TCGTTCGCCGAGCGTCTCATTGCCTTTGCTGCCGTC 75536 Query 94831 GAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTC 94890 ||||| ||||||||||| || || ||| | | || | |||||||||||||| || ||| Sbjct 75537 GAGGGCATCTTCTTCTCGGGGTCGTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTC 75596 Query 94891 ATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAG 94950 ||||| || ||| ||||| |||||||| ||||| || |||||||| |||||| || Sbjct 75597 ATGCCCGGACTCACATTCTCGAACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGAC 75656 Query 94951 TTTGC 94955 ||||| Sbjct 75657 TTTGC 75661 Score = 93.3 bits (102), Expect = 5e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 9694 CTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGAC 9753 |||||| | ||| |||||||| || | ||||| |||||| || || | | || Sbjct 1387496 CTTTCCGATGGCGTCAATCTCGTCGACGAAGATGATGCAGGGGGCGTTCTTCCTGGCAGT 1387555 Query 9754 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9813 | ||||| || || |||||| || || ||||| || |||||||| || || | | Sbjct 1387556 GGCGAAGAGGTCACGGACACGCGAGGGACCGACACCGACGAACATCTCAACGAACTCGGA 1387615 Query 9814 GGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 9873 ||||| | ||||||||| || | || || || |||| |||||| || || Sbjct 1387616 ACCGGAAACCGAAAGGAAGGGGACCTTGGCCTCGCCGGCGGTGGCCTTGGCGAGGAGGGT 1387675 Query 9874 CTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 |||||||||||| || ||| | ||| | |||||| || || |||||||| || Sbjct 1387676 CTTACCCGTACCGGGGGGACCAGAGAGAATGGCACCACGGGGGATCTTGGCACC 1387729 >seq1 Length=5305799 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 94807 CGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATT 94866 || ||| | || |||||||| ||||| || |||||||| || || || || ||| || Sbjct 776422 CGTCTCATTGCGTTTGCGTGCGTTGAAGGCATCTTCTTTTCGGGATCGTTTGCCGCCATC 776363 Query 94867 TATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCT 94926 | |||||||||||||| ||| | |||| || ||| |||||| |||||||| || || Sbjct 776362 TTCTGGCTCAAGAAGCGTGGTTTGATGCGCGGACTCACCTTCTCAAACGAGCTCATATCC 776303 Query 94927 CGTGACGAGGGACTCCACCAAGAGTTTGCG 94956 || ||||| || | ||| || |||||| Sbjct 776302 CGCGACGAAGGCATACACACGGACTTTGCG 776273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260610440240