Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq6 131 5e-25 seq5 89.7 2e-12 seq4 84.2 7e-11 >seq6 Length=2644601 Score = 131 bits (144), Expect = 5e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || || || |||||||| || ||||| || || ||||| | || || ||||| Sbjct 27600 AGGACGAGGTGGAGTGTAGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCC 27541 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || ||||| |||||||| || || ||||| ||||| || || || || || ||| Sbjct 27540 TCGAGCTGCTTTCCGGCAAAGATAAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 27481 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || || || ||||| | || || | || || ||||| || | ||| Sbjct 27480 TGGATCTTCGCCTTGACGTTGTCAATGGTGTCCGACGACTCGACCTCAAGGGTGATGGTC 27421 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || || || || ||||||||||| Sbjct 27420 TTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 27389 Score = 91.5 bits (100), Expect = 4e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || ||||| ||||| || || || || || || Sbjct 27391 CATACCACCACGAAGGCGGAGGACGAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTC 27332 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || || || || || || || ||||| ||||| || || Sbjct 27331 GGAGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATAAGACGCTGCTGGTCGGG 27272 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || || ||||| || || || || || || || || | || || | || Sbjct 27271 GGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTC 27212 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716 || ||||| || | ||||| || || || Sbjct 27211 GACCTCAAGGGTGATGGTCTTGCCCGTAAG 27182 >seq5 Length=2819049 Score = 89.7 bits (98), Expect = 2e-12 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || ||||| || || || ||||| || || || || || || Sbjct 1774722 CATACCACCACGAAGGCGGAGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTC 1774663 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || || || || || ||||| || || ||||| ||||| Sbjct 1774662 CGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGG 1774603 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || || || || || || || | || || | || Sbjct 1774602 GGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTC 1774543 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 || || || || | ||||| || || || || || || Sbjct 1774542 CACCTCGAGGGTGATGGTCTTGCCCGTAAGGGTCTTAAC 1774504 >seq4 Length=3045899 Score = 84.2 bits (92), Expect = 7e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 140574 GTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATT 140633 || || || || || || || || || || ||||| ||||| ||||| ||||| || || Sbjct 1996774 GTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGGATG 1996715 Query 140634 CCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCA 140693 || || || ||||| || || || || || || || || | || || | || || || Sbjct 1996714 CCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCG 1996655 Query 140694 AGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || | ||||| ||||| || || || || ||||||||||| Sbjct 1996654 AGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 1996611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515253895230878