Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3 293 3e-74 seq1 170 2e-37 seq6 123 3e-23 >seq3 Length=3131490 Score = 293 bits (324), Expect = 3e-74 Identities = 536/776 (69%), Gaps = 12/776 (2%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTGTCCGTGAGACGTAC 53251 ||||||| ||| | | ||||||||||| ||| || | || | ||| |||||| ||| Sbjct 1591931 TCATGCGTGTCTCGATTGGTATCCACGGCGACAACATTGACAAG-GTCATTGAGACCTAC 1591989 Query 53252 GACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACG 53311 || | ||| | ||||| || |||||| | || ||||| |||||||| ||||| Sbjct 1591990 AACCTCATGTCGGAGCGTTACTTCACCCACGCCTCCCCTACCCTCTTCAACGCCGGTACC 1592049 Query 53312 AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371 ||||| ||||||||| |||||||| || || ||||||||||||||||| |||||| Sbjct 1592050 CCCCACCCCCAGATGTCGTCGTGCTTCCTTGTCGCCATGAAGGATGACTCGATTGACGGC 1592109 Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431 |||||||| || |||||| || ||||| ||||||||| | || ||||| ||| || Sbjct 1592110 ATCTACGACACCCTCAAGACCTGCGCCCAGATCTCCAAGACTGCCGGCGGTATTGGTCTC 1592169 Query 53432 CAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490 ||| | | | ||| | ||||| || ||| | || || || |||||| | | Sbjct 1592170 CACATTCAC-AACATTCGTGCTAAGGGCTCGTACATTGCTGGCACCAACGGCTATTCGAA 1592228 Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550 || || || || |||||||||| || | || ||| ||||| || ||| |||||||||| Sbjct 1592229 CGGTATTGTTCCCATGCTCCGCGCCTACGACGCCACTGCCCGTTATGTCGACCAGGGTGG 1592288 Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610 |||||| || | || ||||||||||||||||| |||||||||||| | | || Sbjct 1592289 CAACAAGCGCCCTGGTGCCTTTGCCATCTACCTCGAGCCCTGGCACGCCGACGTCTTCGA 1592348 Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TA 53669 || ||||| || || ||| || || | || ||| | || ||||||||| || || Sbjct 1592349 CTTCCTCGACCTTCGCAAGAACCACGGCAAGGAGGAGGTTCGTGCCCGTGACCTCTTCTA 1592408 Query 53670 CAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACC 53729 | || || ||||| | ||||||||||||| || ||| |||| || ||| || Sbjct 1592409 C-GCCCTCTGGATCTCCGACCTCTTCATGCGCCGTGTCGAGGCCGACGGTGACTGGACCC 1592467 Query 53730 TGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGA 53789 | |||||||| ||||||||||||||| | ||| || ||||||||| | | Sbjct 1592468 TCATGTGCCCCGCCGAGTGCCCCGGCCTTTCCGACGTCCACTCGGAGGAGTTTGAGGCCC 1592527 Query 53790 TGTATCGGACGTACGCAGTTCAGGGC---CGCTACAAGAAGAAGGTCAAGGCGCGTGAGG 53846 | || || ||||| | ||||| | ||||| | ||||||| | || Sbjct 1592528 TCTACGAGAAGTACGAGCGTGAGGGCAAGGGTCGCAAGACCA---TCAAGGCTCAGAAGC 1592584 Query 53847 TATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGG 53906 | ||| || |||||| || |||| ||||| || || | |||| |||||||| Sbjct 1592585 TTTGGTTCGCCATCCTCGAGGCCCAGACCGAGACTGGTGGCCCCTTCATGCTCTACAAGG 1592644 Query 53907 ATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAAC 53962 | | | |||| ||| |||||| || || ||||| |||||| ||| |||| Sbjct 1592645 ACGCTGCCAACCGCAAGTCAAACCAGCAGCACCTCGGCACCATCAAGTCGTCCAAC 1592700 Score = 129 bits (142), Expect = 6e-25 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTG 55787 ||||| || ||| ||| || ||||||||| |||||||| | |||||| | || Sbjct 1593449 TCAAGTCCATCTACAAGACCGTCTGGGAGATTTCACAGAAGGCCGTCATTGACCTTGCTG 1593508 Query 55788 CTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTT 55847 | || ||||| || | |||||| ||||| ||||| || |||||| | | | || || | Sbjct 1593509 CCGACCGTGGAGCCTTCATCGATCAGTCGCAGTCGCTCAACATCCACCTCGCCAACCCCT 1593568 Query 55848 CACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTA 55907 | | || || | | |||||||||||| ||||| |||||| ||||||||||| |||| Sbjct 1593569 CGTTCTCCCAGCTCACCTCGATGCACTTCTACGGCTGGAAGCGCGGACTCAAGACTGGTA 1593628 Query 55908 TGTACTATCTGCGGACCCGCGCCAAGGCCAAGGC 55941 | ||||| || || |||||| || |||||| || Sbjct 1593629 TCTACTACCTCCGCACCCGCCCCTCGGCCAACGC 1593662 >seq1 Length=5305799 Score = 170 bits (188), Expect = 2e-37 Identities = 218/298 (73%), Gaps = 2/298 (1%) Strand=Plus/Plus Query 117304 AGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTG 117363 ||||||||||||||||| ||| || || ||||| ||||||| | || ||||||||||| Sbjct 1241403 AGTGAAAATGTAACGAGCGCTAGCTGCGTCCTTTCCACCAGACATGCGAGTACCGAATTG 1241462 Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423 ||| |||| | | ||||| | ||||||| ||| |||||||| ||||| | ||| Sbjct 1241463 TCCGATCGGGGCGAGCAGGTTGATGTTGTTGCTGCCGACAAAGTTCTGAGCGAGACCGAC 1241522 Query 117424 AATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCC 117483 || || || | |||| ||||||| ||||| ||||| || | ||| | | |||||| Sbjct 1241523 GATGGTCGACTGCAAGCTCACCTCACCGTGGTGGTACGCAGTGTTCTCGGAGATGTAGCC 1241582 Query 117484 CGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCAC 117543 ||||| | ||||| || || || |||||| |||||| |||| | | || || Sbjct 1241583 ACTAAGCTGTCCGACCTTGATTTCCTTGGTGAGGTTCCTCTTGAAGCAGCCGAAGATAAC 1241642 Query 117544 CTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGA-GGGATCGAACGCTTGATGTC 117600 ||||| |||| ||||| ||||| || || || ||| ||||||||||| || |||| Sbjct 1241643 TTTGCGTTGACCAGGCTTGAGACCGTCGGCTAC-TGAGGGGATCGAACGGATGTTGTC 1241699 Score = 136 bits (150), Expect = 4e-27 Identities = 305/453 (67%), Gaps = 4/453 (1%) Strand=Plus/Plus Query 151874 ATCCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAA 151933 |||| |||||||| || || || |||||||| || | ||| || | || ||| ||| Sbjct 1241249 ATCCCGTACCGATACCATCGGCGCCGTTGACAAGCACCATGGGGATGATGGGGAGGTAGT 1241308 Query 151934 ACTCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCG 151993 || | ||||| | | || || || || ||| ||| || | || | | ||| || Sbjct 1241309 ACACAGGCTCGATACGCTGGCCATCCTCGATCTGGTAGTTGAGAATGTCGTCGTCGTCCT 1241368 Query 151994 GATCGAATATCCGTCGAGTCATAGGACTCAAACGC-GTGAAGATGTATCGGGAGCTGGCC 152052 | || | |||||||| | | || | ||||| ||||| || | ||| || Sbjct 1241369 TGTGCAAGAGGGCGCGAGTCATGCG-CGGAAGTTCAGTGAAAATGTAACGAGCGCTAGCT 1241427 Query 152053 GCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGG 152112 || ||||| ||||| | || || || || || ||||| || |||| ||||||| | Sbjct 1241428 GCGTCCTTTCCACCAGACATGCGAGTACCGAATTGTCCGATCGGGGCGAGCAGGTTGATG 1241487 Query 152113 TTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCA 152172 |||||| ||| || || |||||||| | | || || || ||||| ||| | ||| Sbjct 1241488 TTGTTGCTGCCGACAAAGTTCTGAGCGAGACCGACGATGGTCGACTGCAAGCTCACCTCA 1241547 Query 152173 CCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCC 152232 |||||||| ||||| || | ||| | |||||| || | ||| | ||||| || ||| Sbjct 1241548 CCGTGGTGGTACGCAGTGTTCTCGGAGATGTAGCCACTAAGCTGTCCGACCTTGATTTCC 1241607 Query 152233 GTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCG 152292 | || |||||| |||||| ||| || | || || ||||| || || || | |||| Sbjct 1241608 TTGGTGAGGTTCCTCTTGAAGCAGCCGAAGATAACTTTGCGTTGACCAGGCTTGAGACCG 1241667 Query 152293 TCCACCACGTGA-GGAATCGAACGCTTGATGTC 152324 || | || ||| || |||||||| || |||| Sbjct 1241668 TCGGCTAC-TGAGGGGATCGAACGGATGTTGTC 1241699 >seq6 Length=2644601 Score = 123 bits (136), Expect = 3e-23 Identities = 325/490 (66%), Gaps = 22/490 (4%) Strand=Plus/Minus Query 74790 TCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAG 74849 || ||||| || | || || ||||| || ||||||||||| | ||| ||||||| | Sbjct 75622 TCGTTCGAGAATGTGAGTCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCG 75563 Query 74850 AAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAAC 74909 || || || |||||||||||| ||||| |||||||| | || || | |||||| Sbjct 75562 AACGACCCCGAGAAGAAGATGCCCTCGACGGCAGCAAAGGCAATGAGACGCTCGGCGAAC 75503 Query 74910 G------GTGCATCGGAAGTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCA 74963 | || | |||| | ||||| | ||||| || || || | | | | ||| Sbjct 75502 GACGACTGTTCGTCGG---TGATCCAGCGGAGCGCCCAGTCGGCCTT-CTTCTTAATGCA 75447 Query 74964 GGGAC-AGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGA----TCCTTGACGA 75018 |||| ||| ||||| || | ||||||| | | | | |||| || || | Sbjct 75446 GGGAATAGTCTCGATGGCCTTGAAGAGG--TAC--TGGCGGCGGGCAGTGTCGCGGATGT 75391 Query 75019 GCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACG 75078 |||| || | ||| ||||| |||||||| || || ||| | | |||| | Sbjct 75390 AGGTGTCGATGAGAAGCGAGTAGGTCTCCGAGTGGATGTTCTCCATCATGATCTGGAAGC 75331 Query 75079 CGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCT 75138 ||||||| | | |||||||||||||| || || | || | | ||| |||| Sbjct 75330 CGTAGAAGGTCTTGGCCTCTGCAATCTGGACCTCGCCGCAGAAGCGCTCGACGAGGTTCT 75271 Query 75139 CCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCT 75198 | ||||||| |||||||| ||||||||||| || || || | |||||||| |||| Sbjct 75270 CGTTGACGATTCCGTCCGACGCGGCGAAAAAGGCAAGGACGTGCTCGATAAAGTAACGCT 75211 Query 75199 CATCGTCAGTGAG---TTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGA 75255 ||| || |||| |||||||| || | ||||| || | | |||||||||| Sbjct 75210 CATTATCGTTGAGCTTGTTGTCCCAGTCGTGAAGGTCGGGGGCAAGGTTAATCTCCTCGG 75151 Query 75256 CCGTCCAGAA 75265 | |||||||| Sbjct 75150 CGGTCCAGAA 75141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215822154800