Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq3 311 1e-79 seq6 165 9e-36 seq5 140 4e-28 seq4 129 7e-25 seq1 129 7e-25 >seq3 Length=3131490 Score = 311 bits (344), Expect = 1e-79 Identities = 703/1046 (67%), Gaps = 13/1046 (1%) Strand=Plus/Minus Query 80715 CATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA 80774 |||||| |||| || || ||||| || |||| ||| |||||||||||| ||||||| Sbjct 1592961 CATGAAGGCGTCGGCAAGACCCTGGACACCGAGACCGACGGGGCGGTGGCGCATGTTCGA 1592902 Query 80775 TCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGT 80834 | |||||| |||| ||||| |||| |||||| || ||||| || Sbjct 1592901 GTTCCTGGCCTCGGGAACGGGGTAGTAGTTGCGCGAGATGACAGCGTCGAGGTTCTTGGT 1592842 Query 80835 AACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAAT-TG--GTTCCCCT--TC-AC 80888 ||||||| || | || ||||| |||| |||||| | || |||| | || || Sbjct 1592841 AACAACCTTGGTGATCTCGTGAAGCTTCTTGAAGTCGTAGGTGCCGTTCTCAAAGTCGAC 1592782 Query 80889 AAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAA 80948 ||| || || ||| ||||| || || ||||| ||||| ||||| || | | | | Sbjct 1592781 AAAGGCAGGGAGGGCAAGGGAGGCAAGGTTGCAGACGGCGACCTCGTCGGGGGCCGAGTA 1592722 Query 80949 CTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGA 81008 ||||| ||| || ||||| | || || ||||| || || || |||| | ||||||||| Sbjct 1592721 CTCGATGATCTCAGTGCAGAGGTTGGACGACTTGATGGTGCCGAGGTGCTGCTGGTTTGA 1592662 Query 81009 CTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTT 81068 |||| |||| ||||||||||||| |||| | ||| ||| |||||| ||| | || Sbjct 1592661 CTTGCGGTTGGCAGCGTCCTTGTAGAGCATGAAGGGGCCACCAGTCTCGGTCTGGGCCTC 1592602 Query 81069 GAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCAC 81128 |||||||||| ||||| || | ||||||| |||||| ||||| || | | Sbjct 1592601 GAGGATGGCGAACCAAAGCTTCTGAGCCTTGATGGTCTTGCGACCCTTGCCCTCACGCTC 1592542 Query 81129 ATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTC 81188 ||||| |||| | || |||| | ||| | || | ||| | |||||||| Sbjct 1592541 GTACTTCTCGTAGAGGGCCTCAAACTCCTCCGAGTGGACGTCGGAAAGGCCGGGGCACTC 1592482 Query 81189 GTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGG 81248 | |||||||| ||| |||||| |||| ||| ||| |||||| ||| | Sbjct 1592481 GGCGGGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGGCGCATGAAGAGGTCGGA 1592422 Query 81249 GATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCG 81308 ||||||||||||| ||| ||||| ||| || ||||||| | || ||||| ||| Sbjct 1592421 GATCCAGAGGGCGTAGAAGAGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCG 1592362 Query 81309 CAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCC 81368 | ||||| ||||| | || ||| || ||||| ||||| || || | ||| | | || Sbjct 1592361 AAGGTCGAGGAAGTCGAAGACGTCGGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACC 1592302 Query 81369 CTTGCG---ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACAT 81425 ||| ||||||||||| ||| ||||||||||| |||| | | || | ||| Sbjct 1592301 AGGGCGCTTGTTGCCACCCTGGTCGACATAACGGGCAGTGGCGTCGTAGGCGCGGAGCAT 1592242 Query 81426 AGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCAC 81485 || | ||||| | || | ||||| || || | || ||| ||||| || || | Sbjct 1592241 GGGAACAATACCGTTCGAATAGCCGTTGGTGCCAGCAATGTACGAGCCCTTAGCACGAAT 1592182 Query 81486 CTTGCTGATTG-AAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCA 81544 ||| ||| || ||||| || || || | ||| || ||||| || || || | Sbjct 1592181 GTTG-TGAATGTGGAGACCAATACCGCCGGCAGTCTTGGAGATCTGGGCGCAGGTCTTGA 1592123 Query 81545 TGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACA 81604 ||| || || || || || || || | |||||| | | | ||| || |||| Sbjct 1592122 GGGTGTCGTAGATGCCGTCAATCGAGTCATCCTTCATGGCGACAAGGAAGCACGACGACA 1592063 Query 81605 TCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGT 81664 |||| ||| | ||||| ||||| || || |||| ||||| |||| ||||| | Sbjct 1592062 TCTGGGGGTGGGGGGTACCGGCGTTGAAGAGGGTAGGGGAGGCGTGGGTGAAGTAACGCT 1592003 Query 81665 TTGACATCAGGTCATAGGTTTCCTTGACGCGTG-GAATATCGTCACCGTGAATACCGATA 81723 ||||| |||| ||||| || |||| | || ||| | ||| ||||| ||||| || Sbjct 1592002 CCGACATGAGGTTGTAGGTCTCAATGAC-CTTGTCAATGTTGTCGCCGTGGATACCAATC 1591944 Query 81724 GCTACACGCATAAACATGTACTGGGG 81749 | |||||||| | ||||| |||||| Sbjct 1591943 GAGACACGCATGATCATGTGCTGGGG 1591918 Score = 98.7 bits (108), Expect = 1e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 80035 CGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATA 80094 || || || || ||||| || || |||||||| || |||||||||||| | |||||| Sbjct 1593647 CGGGTGCGGAGGTAGTAGATACCAGTCTTGAGTCCGCGCTTCCAGCCGTAGAAGTGCATC 1593588 Query 80095 GAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAG 80154 || |||||| | | | |||||| | | | |||||| || ||||| |||||| | Sbjct 1593587 GAGGTGAGCTGGGAGAACGAGGGGTTGGCGAGGTGGATGTTGAGCGACTGCGACTGATCG 1593528 Query 80155 ATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACT 80214 ||||| || ||||| || || || | ||||| | | ||| |||| ||| ||||| || Sbjct 1593527 ATGAAGGCTCCACGGTCGGCAGCAAGGTCAATGACGGCCTTCTGTGAAATCTCCCAGACG 1593468 Query 80215 GT 80216 || Sbjct 1593467 GT 1593466 >seq6 Length=2644601 Score = 165 bits (182), Expect = 9e-36 Identities = 160/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 ||||| |||||||| || || |||||||| ||||| || | ||| | || | ||| Sbjct 27182 CTTACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATCGACAACGTCAAG 27241 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || || |||||||||||||| ||||| || |||||||||||||| ||||| || || Sbjct 27242 GCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGTCTTATTTTCGCCGGC 27301 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 ||||| |||||||| | |||||||| | ||||| || |||| ||||| |||||||| Sbjct 27302 AAGCAGCTCGAGGACGGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCCACTCTG 27361 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || ||| | || ||||| ||||| Sbjct 27362 CACCTCGTCCTCCGCCTTCGTGGTGG 27387 Score = 163 bits (180), Expect = 3e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || ||||||||||| || || |||||||| ||||| Sbjct 27389 ATGCAGATTTTCGTCAAGACTCTGACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCG 27448 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||| || || |||||||||||||| || || || |||||| Sbjct 27449 GACACCATTGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 27508 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || ||||| || ||||| |||||||||| || || || | ||||| || Sbjct 27509 CAGCGCCTTATCTTTGCCGGAAAGCAGCTCGAGGATGGCCGCACTCTTTCTGACTACAAC 27568 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 | || ||||| || || || || || ||| | |||||||| || || || Sbjct 27569 ATTCAGAAGGAGTCTACACTCCACCTCGTCCTCCGTCTTCGTGGCGGCCA 27618 Score = 123 bits (136), Expect = 3e-23 Identities = 174/243 (72%), Gaps = 5/243 (2%) Strand=Plus/Plus Query 64627 CTGTTCAGGGCTATAGAGACTGTACCCGCTGTTACTAAAAAGGCTGAATGGGCCATCCGG 64686 || |||| ||| || |||||| | ||| ||| || ||||| || ||||| |||| Sbjct 75420 CTCTTCAAGGCCATCGAGACTATTCCCTGCATTAAGAAGAAGGCCGACTGGGCGCTCCGC 75479 Query 64687 TGGATGAATCGTGG----GTCGTCGTTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGA 64742 ||||| | || | ||||||||| | |||||||| || ||||| || || Sbjct 75480 TGGATCAC-CGACGAACAGTCGTCGTTCGCCGAGCGTCTCATTGCCTTTGCTGCCGTCGA 75538 Query 64743 AGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGAT 64802 || || ||||| || ||||| ||| || || |||||||| || ||||| ||||| || Sbjct 75539 GGGCATCTTCTTCTCGGGGTCGTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCAT 75598 Query 64803 GCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGGCTCCACCAAGAATT 64862 ||| || || | || ||||||||||| ||||| || |||||||| |||||| || || Sbjct 75599 GCCCGGACTCACATTCTCGAACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTT 75658 Query 64863 TGC 64865 ||| Sbjct 75659 TGC 75661 >seq5 Length=2819049 Score = 140 bits (154), Expect = 4e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 || ||||| ||||| |||||||| || || || ||||| ||||| || | ||| | Sbjct 1774504 GTTAAGACCCTTACGGGCAAGACCATCACCCTCGAGGTGGAGTCTTCGGACACCATCGAC 1774563 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || | ||||| || || |||||||||||||| || || || ||||||||||| || || Sbjct 1774564 AACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATC 1774623 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || || || ||||| |||||||| | || ||||| | ||||| || |||| ||||| Sbjct 1774624 TTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAG 1774683 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || || || ||| | || ||||| ||||| Sbjct 1774684 TCGACCCTCCACCTTGTCCTCCGCCTTCGTGGTGG 1774718 >seq4 Length=3045899 Score = 129 bits (142), Expect = 7e-25 Identities = 134/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || ||||||||||| || || || ||||| ||||| Sbjct 1996611 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCG 1996670 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || |||||||||||||| || || || |||||| Sbjct 1996671 GACACCATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 1996730 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 |||||||| || || || || ||||| |||||||| | || ||||| | ||||| Sbjct 1996731 CAGCGTCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTA 1996786 >seq1 Length=5305799 Score = 129 bits (142), Expect = 7e-25 Identities = 288/428 (67%), Gaps = 6/428 (1%) Strand=Plus/Minus Query 31978 GTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAAC 32037 || || ||||| ||||||||| || ||||| || || | || |||| |||||| |||| Sbjct 1241675 GTAGCCGACGGTCTCAAGCCTGGTCAACGCAAAGTTATCTTCGGCTGCTTCAAGAGGAAC 1241616 Query 32038 CTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTAT 32097 || | | || || ||||| | ||||| |||||| | | ||| | || || || Sbjct 1241615 CTCACCAAGGAAATCAAGGTCGGACAGCTTAGTGGCTACATCTCCGAGAACACTGCGTAC 1241556 Query 32098 CACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGT 32157 |||||||| |||| | | ||| ||||| ||| || ||||||||||||||||| Sbjct 1241555 CACCACGGTGAGGTGAGCTTGCAGTCGACCATCGTCGGTCTCGCTCAGAACTTTGTCGGC 1241496 Query 32158 GCAAATAACCTGAACTTACTCGAGCC-ATCTGGACAGTTTGGGACCCGGCTCGCCGGTGG 32216 || ||| | ||| | |||| || ||| ||||| || || || || | | ||||| Sbjct 1241495 AGCAACAACATCAACCTGCTCGCCCCGATC-GGACAATTCGGTACTCGCATGTCTGGTGG 1241437 Query 32217 CAAGGATGCTGCGAGCTCCCGTTACATCTTCACCCGTCT--CGCACCTTCGACGCGCAAG 32274 ||||| || || ||| | |||||||| ||||| || ||| | | ||| ||| Sbjct 1241436 AAAGGACGCAGCTAGCGCTCGTTACATTTTCACTGAACTTCCGCGCAT--GACTCGCGCC 1241379 Query 32275 ATTTTCGACCCGTCGGACGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTC 32334 | || || | ||||| | | ||||| ||| | | || || || ||||| || Sbjct 1241378 CTCTTGCACAAGGACGACGACGACATTCTCAACTACCAGATCGAGGATGGCCAGCGTATC 1241319 Query 32335 GAGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAACGGTGCAGAAGGCATC 32394 ||||| |||| |||| || | | || ||| | | || ||||| || || || ||| Sbjct 1241318 GAGCCTGTGTACTACCTCCCCATCATCCCCATGGTGCTTGTCAACGGCGCCGATGGTATC 1241259 Query 32395 GGAACGGG 32402 || ||||| Sbjct 1241258 GGTACGGG 1241251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310214649120