Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq9 111 1e-19 >seq9 Length=1756552 Score = 111 bits (122), Expect = 1e-19 Identities = 233/341 (68%), Gaps = 10/341 (3%) Strand=Plus/Plus Query 34230 TGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTCGTGAGGG 34289 |||| ||||| || || | | | |||||| |||||||||| || ||||||||||| | Sbjct 1205425 TGACCACGAAGCGCGTCTTCACGCGCGGCGTGATCGAGGAGCTCCTCTGGTTCGTGAGCG 1205484 Query 34290 GGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGT 34349 | ||| || | ||||| || |||| || ||| | |||||||||| |||| Sbjct 1205485 GCTGCACCGACGGCGCCAAGCTCGCGGCCCGTGGCGTGCACATCTGGGACGGCAACGGCA 1205544 Query 34350 CTCGAGACTTTCTGGACAAGCGGGGGT---TCCCATCTCGGGAGGAGGGCGACTTGGGCC 34406 || || | || ||| ||| || || || | | | ||||||||| | || | Sbjct 1205545 GCCGCGAGTACCTCGACC-GCGTCGGCCTCTCGCACCGCCGC--GAGGGCGACCTCGGAC 1205601 Query 34407 CGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAGCGGACT 34466 | |||||||| ||||| ||| | |||||||| || ||||| | | ||| | |||| Sbjct 1205602 CAGTCTACGGCTTCCAATGGCGCCACTTTGGCGCAGAGTACAAGACGGCCGACGACGACT 1205661 Query 34467 ATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACC-TTGA-AGCGGAACCC 34524 | ||||| ||||| | |||||||| || | || ||||||| ||| | | ||||| Sbjct 1205662 ACTCGGGCCAGGGCGTCGACCAGCTCAAGGAGGTCATCGACAAGATTGTCAAC--AACCC 1205719 Query 34525 TGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGG 34565 ||||| | |||||| | | ||||||||||| |||| Sbjct 1205720 CACCGACAGGCGTATCGTGCTCTCGGCGTGGAACCCCAAGG 1205760 Score = 111 bits (122), Expect = 1e-19 Identities = 233/341 (68%), Gaps = 10/341 (3%) Strand=Plus/Minus Query 6780 CCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCT-TCAA-GGT 6837 |||| ||||||||||| | | |||||| | ||||| ||||| | | ||| | Sbjct 1205760 CCTTGGGGTTCCACGCCGAGAGCACGATACGCCTGTCGGTGGGGTT--GTTGACAATCTT 1205703 Query 6838 GTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCG 6897 |||||| || | || |||||||| | ||||| ||||| ||||| | ||| | | Sbjct 1205702 GTCGATGACCTCCTTGAGCTGGTCGACGCCCTGGCCCGAGTAGTCGTCGTCGGCCGTCTT 1205643 Query 6898 ATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTC 6957 ||||| || |||||||| | ||| ||||| |||||||| || || | ||||||||| Sbjct 1205642 GTACTCTGCGCCAAAGTGGCGCCATTGGAAGCCGTAGACTGGTCCGAGGTCGCCCTC--G 1205585 Query 6958 CCGAGATGGGA---ACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGAT 7014 | | | || || || ||| ||| || | || || |||| |||||||||| Sbjct 1205584 CGGCGGTGCGAGAGGCCGACGC-GGTCGAGGTACTCGCGGCTGCCGTTGCCGTCCCAGAT 1205526 Query 7015 CTTCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAG 7074 | ||| || |||| || ||||| | || ||| || ||||||||||| || || Sbjct 1205525 GTGCACGCCACGGGCCGCGAGCTTGGCGCCGTCGGTGCAGCCGCTCACGAACCAGAGGAG 1205466 Query 7075 CTCCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCA 7115 |||||||| |||||| | | | || || ||||| |||| Sbjct 1205465 CTCCTCGATCACGCCGCGCGTGAAGACGCGCTTCGTGGTCA 1205425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448262254314720