Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq5 96.9 8e-15 seq6 89.7 1e-12 seq4 87.8 4e-12 >seq5 Length=2819049 Score = 96.9 bits (106), Expect = 8e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||||||||| || || || ||||| || ||||||||||| || | | || | || || Sbjct 1774704 GAGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTC 1774645 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || ||||||||||| || | ||||||||| | | ||| || ||||| || Sbjct 1774644 CTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 1774585 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || ||||| | || | | |||| ||| ||| || || || || || || Sbjct 1774584 CTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATGGT 1774525 Query 152072 TTTGCCCGTGAGAGTCTTCAC 152092 |||||||| || ||||| || Sbjct 1774524 CTTGCCCGTAAGGGTCTTAAC 1774504 >seq6 Length=2644601 Score = 89.7 bits (98), Expect = 1e-12 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| || || ||||| ||||| || ||||||||||| |||| | || | || || Sbjct 27373 GAGGACGAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTC 27314 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || |||||||| ||||| | ||||||||| | | || || ||||| || Sbjct 27313 CTCGAGCTGCTTGCCGGCGAAAATAAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTC 27254 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || ||||| | || | | |||| || ||| || ||||| || || || Sbjct 27253 CTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGT 27194 Query 152072 TTTGCCCGTGAG 152083 |||||||| || Sbjct 27193 CTTGCCCGTAAG 27182 >seq4 Length=3045899 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || |||||||||||||| | ||||||||| | | ||| || ||||| || || || || Sbjct 1996753 TTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTC 1996694 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||||| | || | | |||| ||| ||| || || || || || || ||||| ||| Sbjct 1996693 GCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTG 1996634 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 || ||||| ||||| | |||||| Sbjct 1996633 AGGGTCTTGACGAAAATCTGCAT 1996611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153820415633446