Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq5 143 6e-29 seq4 141 2e-28 seq6 132 1e-25 >seq5 Length=2819049 Score = 143 bits (158), Expect = 6e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAG 177992 || || || || || || || || ||||||||||||||||| || ||||||||||| Sbjct 1774504 GTTAAGACCCTTACGGGCAAGACCATCACCCTCGAGGTGGAGTCTTCGGACACCATCGAC 1774563 Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052 |||||||| ||||| |||||||| || || ||||| || |||||||| || || ||| Sbjct 1774564 AACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATC 1774623 Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAA 178112 |||||||| || |||||||| || || | || ||| | || || ||| |||| || || Sbjct 1774624 TTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAG 1774683 Query 178113 TCAACACTGCATCTTGT 178129 || || || || ||||| Sbjct 1774684 TCGACCCTCCACCTTGT 1774700 >seq4 Length=3045899 Score = 141 bits (156), Expect = 2e-28 Identities = 135/173 (78%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| || || || |||||||||||||| || || ||| Sbjct 1996614 CAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCGGAC 1996673 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 1996674 ACCATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAG 1996733 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096 || |||||||||||||| || |||||||| || || | || ||| | || || Sbjct 1996734 CGTCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTA 1996786 >seq6 Length=2644601 Score = 132 bits (146), Expect = 1e-25 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 || || || || || |||||||| ||||| || ||| ||||||||||| |||||||| Sbjct 27182 CTTACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATCGACAACGTCAAG 27241 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 ||||| |||||||| || || || || || |||||||| || ||||| |||||||| Sbjct 27242 GCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGTCTTATTTTCGCCGGC 27301 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTG 178121 || |||||||| || || | || || |||| || ||| |||| || || || || ||| Sbjct 27302 AAGCAGCTCGAGGACGGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCCACTCTG 27361 Query 178122 CATCTTGT 178129 || || || Sbjct 27362 CACCTCGT 27369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730799007044