Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq6 145 7e-30 seq5 125 7e-24 seq4 116 3e-21 >seq6 Length=2644601 Score = 145 bits (160), Expect = 7e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || ||||| | || || || || || ||||||||||||||| ||||| || Sbjct 27616 GCCGCCACGAAGACGGAGGACGAGGTGGAGTGTAGACTCCTTCTGAATGTTGTAGTCAGA 27557 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || ||||||||||| ||||| || || |||||||| ||||| | ||| Sbjct 27556 AAGAGTGCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATAAGGCGCTGCTGGTCAGGGGG 27497 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| || | || || | ||| | | | ||||| |||||| | Sbjct 27496 GATGCCCTCCTTGTCC-TGGATCTTCGCCTTGACGTTGTCAATGGTGTCCGACGACTCGA 27438 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || || || || || ||||| ||||| |||||||||||||| Sbjct 27437 CCTCAAGGGTGATGGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 27389 Score = 127 bits (140), Expect = 2e-24 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || || ||||| ||| ||||||||| ||||| ||||||||| Sbjct 27387 CCACCACGAAGGCGGAGGACGAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAG 27328 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| |||||||||||||||||||| || || ||||| ||||| | |||| Sbjct 27327 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATAAGACGCTGCTGGTCGGGGGGA 27268 Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778 | || |||||||||| ||| || Sbjct 27267 ATGCCCTCCTTGTCCTGGATCTT 27245 >seq5 Length=2819049 Score = 125 bits (138), Expect = 7e-24 Identities = 138/181 (76%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| ||||| ||||| || |||||||| |||| |||||||||||||||||||| Sbjct 1774683 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 1774624 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 || |||||||| ||||| | ||| | || |||||||||| || | || || | ||| Sbjct 1774623 GATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC-TGGATCTTGGCCTTGACGT 1774565 Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | | | ||||| ||||||||||| | || || || || ||||| || ||||| | Sbjct 1774564 TGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTAAGGGTCTTAA 1774505 Query 41850 C 41850 | Sbjct 1774504 C 1774504 >seq4 Length=3045899 Score = 116 bits (128), Expect = 3e-21 Identities = 134/178 (75%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 41687 TAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGG 41746 ||||| || |||||||| |||| |||||||||||||||||||| || || ||||| ||| Sbjct 1996786 TAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGG 1996727 Query 41747 TCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCT 41805 || | ||| | || |||||||||| || | || || | ||| | | | ||||| Sbjct 1996726 TCAGGGGGGATGCCCTCCTTGTCC-TGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGA 1996668 Query 41806 CGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| ||||| | || || || || || || || ||||| ||||||||||||||| Sbjct 1996667 AGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCATG 1996610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303849751200