Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20montevideense_20[genbank_20GCA_5F001598995.1_202016- 03-01] 61 sequences; 24,872,216 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq7 109 1e-18 seq8 100 6e-16 seq5 84.2 5e-11 >seq7 Length=1425097 Score = 109 bits (120), Expect = 1e-18 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 230410 GAAAAGGAGTTCATTTGTGACGCTATTCCA-TGTCGCCTTATTGGCATGAACGCTGAACT 230468 ||| |||||||| || || || | || |||||| | || || |||||||| | || Sbjct 37592 GAACAGGAGTTCCTTACCGAGGCGCTCCCCGTGTCGC-TCATCGGTATGAACGCCGGTCT 37650 Query 230469 TATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAA 230528 ||| | || ||||| || ||||| |||||||| | | || || ||||| |||| || Sbjct 37651 CATGTGCCAATACATTGAGTTCGTCGCCGACCGTCTGCTCGTCGCTCTTGGCAACGACAA 37710 Query 230529 AGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGAC 230588 | |||||||| | ||| ||||| | ||||||||| | || || || ||||| ||| | Sbjct 37711 GATCTACAACTCGACGAATCCCTTCGACTTTATGGAGATGATCTCTCTGCAAGGCAAGGC 37770 Query 230589 CAACTTCTTCGA 230600 |||||||||||| Sbjct 37771 CAACTTCTTCGA 37782 >seq8 Length=1386445 Score = 100 bits (110), Expect = 6e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 230470 ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAA 230529 ||| | |||||||| |||||||| || |||||| || | || ||||| || || ||||| Sbjct 724914 ATGTGCCAGTACATGGAATTCGTCGCTGACCGCCTTGTCGTCGCACTGGGATATGAGAAG 724855 Query 230530 GTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACC 230589 | |||||| | | || ||||| | | ||||||||||| ||||| ||||| || || Sbjct 724854 ATCTACAACGCAACCAATCCCTTCGACTGGATGGAGCTCATCTCGCTGCAAGGCAAAGCC 724795 Query 230590 AACTTCTTCGAAAAGCGTGTCAG 230612 ||||| ||||| ||| ||||| Sbjct 724794 AACTTTTTCGAGTCGCGCGTCAG 724772 >seq5 Length=1972470 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/88 (82%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 165601 CTCGCCATAGCTCAGTTGGAAGAGCACCGGACTGTAAATGAAAACACATTAATCCGTAGG 165660 ||| | ||||||||||||| ||||| ||||||||||| ||| | | ||| |||||| || Sbjct 1743065 CTCTCAATAGCTCAGTTGGTAGAGCGCCGGACTGTAACTGATACCTCAT--ATCCGTCGG 1743008 Query 165661 TCCCCCGTTCGAACCGGGGTGGCGAGAA 165688 ||||| ||||||| | |||| | ||||| Sbjct 1743007 TCCCCTGTTCGAATCAGGGTTGGGAGAA 1742980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823173244430