Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20montevideense_20[genbank_20GCA_5F001598995.1_202016- 03-01] 61 sequences; 24,872,216 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq7 120 4e-22 seq6 98.7 1e-15 seq8 82.4 9e-11 >seq7 Length=1425097 Score = 120 bits (132), Expect = 4e-22 Identities = 179/252 (71%), Gaps = 3/252 (1%) Strand=Plus/Minus Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190 || ||| || || ||| ||| ||||||||||| | || | |||||||| || || Sbjct 37519 CAGACAGGCAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAAGT 37460 Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAA 24250 ||| |||||||| ||||||||||| || ||||| || || || ||||| || ||||| || Sbjct 37459 GAGGCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATCGAGGCAAACGAGCCAGAGAA 37400 Query 24251 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA--ACCGGCGCT-GTC 24307 || || || || || || || || ||||| || | || || | || ||||| ||| Sbjct 37399 AAAGATACCCTCGACGGCGGCGAACGCAATGAGGCGCTCAGCAAAGGACGAGCGCTCGTC 37340 Query 24308 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 24367 ||||| | ||||| ||||||||||| || | || || || ||||| || || Sbjct 37339 GGAAATCCAACGGAGGGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGC 37280 Query 24368 ATTAAAGAGATA 24379 || ||||| || Sbjct 37279 CTTGAAGAGGTA 37268 >seq6 Length=1458149 Score = 98.7 bits (108), Expect = 1e-15 Identities = 427/673 (63%), Gaps = 2/673 (0%) Strand=Plus/Minus Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040 ||||| || || | || ||||| | | ||| || ||||| ||| || || ||||| Sbjct 935148 CCAGGGCACTCGGCGGGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTTCATG 935089 Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100 ||||| ||||| | ||| ||||| || || || | | | | ||||| ||||| Sbjct 935088 AAGAGGTCAGGGACCCAGAGAGCGTAGAACAGGTCACGCGCGCGAACCTCCTCCTTTCCG 935029 Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160 ||||| || || ||||| | | || || | |||||| || || | ||| ||| Sbjct 935028 TGGTTCTTGCGGAGGTCAAGGAAGTCGAAAACGTCCGCATGCCAGGGCTCAAGGTAGATG 934969 Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220 | | | ||||| || ||||| || ||||| || | ||| | ||||| | || Sbjct 934968 GCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCGACGTAACGGGCGGTCGCGTCGTAG 934909 Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280 | | | ||| || | |||||| ||||| ||| ||||| |||| ||| || || Sbjct 934908 GCACGGAGCATGGGGACAATACCGTTGGAGTAACCGTTGGTTCCGGCGATGTACGAGCCC 934849 Query 54281 CTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCG 54340 |||||||||| || ||| ||||| || || || || | || ||||| ||| Sbjct 934848 TTGGCACGAATGTTGTGAATGTGGAGACCAATGCCACCAGCAGTCTTGGAGATCTGGGCG 934789 Query 54341 CATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 54400 || || | || || |||||||| || || || ||| |||| | || || Sbjct 934788 CAGGTCTTGAGGGTGTCGTAGATGCCGTCGATCGAGTCGTCCTTCATAGCGACGAGGAAG 934729 Query 54401 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 54460 || ||||| || | | ||| || || || || | ||| || |||||||| || Sbjct 934728 CACGACGACATCTGAGGGTGGGGAGTACCAGCGTTGAAGAGGGTCGGGGAAGCGTGAGTG 934669 Query 54461 AACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTAT-ATCCCATTGATG 54519 || | || || | || ||||||||||| || | ||| || | || | || Sbjct 934668 AAGTAGCGCTCGGACATGAGGTTGTACGTCTCAATGACCTTGTCGATGTTGTCACCG-TG 934610 Query 54520 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 54579 || || | | |||||||| | ||||||||| || | || | | |||| || || Sbjct 934609 GATACCGATGGAAACACGCATAATCATGTGCTGCGGACGCTCGGCCACCTTGCCGTCAAT 934550 Query 54580 TTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 54639 || | || || || | || || ||||| || |||||||| | ||||| || Sbjct 934549 GCGCAAGAGATATGAGCGCTCGAGGGTCTTGAAACCGAAGTAGTTGTAGGCGAAGTCACG 934490 Query 54640 TTCGTAAATAATA 54652 ||||| || ||| Sbjct 934489 GTCGTAGATTATA 934477 >seq8 Length=1386445 Score = 82.4 bits (90), Expect = 9e-11 Identities = 148/210 (70%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || || || ||| ||| | |||||| |||| | || | || || || || || || Sbjct 725089 CACGCAAAGTCGGTGTGAATACCCTCATCTCGAGAGATAAGCTCATTCGAGAATGTAAGG 725148 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254 || |||| || || ||||| || ||||| || |||| ||||||||||| || ||||| Sbjct 725149 CCACGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGCAGCAAATGATCCCGAGAAGAAG 725208 Query 24255 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCAT--GT- 24311 || || || || ||||||||| || |||| | | | || |||| |||| | || Sbjct 725209 ATGCCCTCCACACACGCAAAGGCGATCAGTC-TAGTGCGGAA-CGGC-ATGTCGTTCGTG 725265 Query 24312 ATCCACTTTTGAGCCCAATCGGCCTTCTTT 24341 || |||| | ||||| |||||||||||| Sbjct 725266 ATGTACTTGAGCGCCCAGTCGGCCTTCTTT 725295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721147287280