Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20montevideense_20[genbank_20GCA_5F001598995.1_202016- 03-01] 61 sequences; 24,872,216 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq7 233 2e-56 seq10 143 3e-29 seq1 109 6e-19 seq8 98.7 1e-15 >seq7 Length=1425097 Score = 233 bits (258), Expect = 2e-56 Identities = 343/483 (71%), Gaps = 2/483 (0%) Strand=Plus/Plus Query 116948 TTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGG 117007 || || ||||||||||| || || ||| |||| |||||||||| ||||| || || ||| Sbjct 37274 TTCAAGGCCATCGAGACCATCCCCTGCATCAAGAAGAAGGCCGACTGGGCCCTCCGTTGG 37333 Query 117008 ATCGCCGGCAGAGAGGCCG-CCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGG 117066 || ||| | ||| | || |||| | |||||||| | || ||||| ||||||||||| Sbjct 37334 ATTTCCGAC-GAGCGCTCGTCCTTTGCTGAGCGCCTCATTGCGTTCGCCGCCGTCGAGGG 37392 Query 117067 CGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCC 117126 |||| || || ||| || ||| | || || ||||||||||| || ||||||||||| Sbjct 37393 TATCTTTTTCTCTGGCTCGTTTGCCTCGATCTTCTGGCTCAAGAAGCGTGGCCTCATGCC 37452 Query 117127 CGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGC 117186 |||||| |||||| ||||||||||||||| | ||||||||||| || ||||||||| Sbjct 37453 CGGCCTCACTTTCTCCAACGAGCTCATCTCGCGTGACGAGGGTCTCCACACCGACTTTGC 37512 Query 117187 CTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGT 117246 |||| |||| |||| ||| | | || ||| | | | | | | |||| | Sbjct 37513 CTGTCTGCTTTTCACCCATCTCCGCCGTCGCCCGCACCCCAACCTCATTGAGAAGATTAT 37572 Query 117247 CACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCT 117306 | ||| || ||| || || ||| ||||| ||||| ||||| || ||| || | Sbjct 37573 CCGCGAGGCCGTCAAGATTGAACAGGAGTTCCTTACCGAGGCGCTCCCCGTGTCGCTCAT 37632 Query 117307 GGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCT 117366 || | || || |||| |||||||| ||||||||||||||| | ||||| | Sbjct 37633 CGGTATGAACGCCGGTCTCATGTGCCAATACATTGAGTTCGTCGCCGACCGTCTGCTCGT 37692 Query 117367 CGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCAT 117426 || || | | || |||| ||||||| || | || || | ||||||||| | | || Sbjct 37693 CGCTCTTGGCAACGACAAGATCTACAACTCGACGAATCCCTTCGACTTTATGGAGATGAT 37752 Query 117427 CTC 117429 ||| Sbjct 37753 CTC 37755 Score = 152 bits (168), Expect = 5e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| |||| ||||| | || Sbjct 29761 ATGCAGATTTTCGTCAAGACTCTCACTGGCAAGACCATCACCCTCGAGGTCGAGTCGTCC 29820 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || |||| ||||| |||||||| ||| | ||||| Sbjct 29821 GACACTATCGACAACG-TGAAGGCGAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCA 29879 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| || ||||| ||||| || |||| || |||||| |||||||| Sbjct 29880 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAAGACGGTCGTACCCTCTCGGACTACAA 29939 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| || || || || | ||| || | || || Sbjct 29940 CATCCAGAAGGAGTCCACACTTCACCTCGTTCTCCGCCTGCGTGGTGG 29987 Score = 147 bits (162), Expect = 2e-30 Identities = 160/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| | || ||||| | | Sbjct 29533 ATGCAGATTTTCGTCAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTCGAGTCTTCG 29592 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || |||| ||||| ||||||||||| | ||||| Sbjct 29593 GACACCATCGACAACG-TCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCA 29651 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| || ||||| ||||| || |||| || |||||| ||||| || Sbjct 29652 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGTCGTACCCTCTCGGACTATAA 29711 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || ||||| || Sbjct 29712 CATCCAGAAGGAGTCGACCCTTCATCTTGT 29741 Score = 138 bits (152), Expect = 1e-27 Identities = 151/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 40702 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA- 40760 || || || || |||||||| ||||||||| | || ||||| | | |||| | | | Sbjct 29036 GTCAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTCGAGTCTTCGGACACCATCGAC 29095 Query 40761 AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCAT 40820 |||| |||||| || |||| ||||| ||||||||||| | |||||||| || ||||| Sbjct 29096 AACG-TCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCAGCAGCGTCTCAT 29154 Query 40821 CTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGA 40880 || || ||||| ||||| || |||| || |||||| |||||||||||||||||||| Sbjct 29155 CTTTGCCGGCAAGCAGCTCGAGGACGGTCGTACCCTCTCGGACTACAACATCCAGAAGGA 29214 Query 40881 GGCCACGCTGCATCTAGT 40898 | | || || ||||| || Sbjct 29215 GTCGACCCTTCATCTCGT 29232 Score = 129 bits (142), Expect = 6e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| || ||||| | || || || | || Sbjct 29989 ATGCAGATTTTCGTCAAGACCCTCACTGGCAAGACTATCACTCTTGAAGTTGAGTCGTCC 30048 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| || || | ||||| |||||||| ||| | |||||| Sbjct 30049 GACACTATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 30108 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| ||||||||| ||||| || |||| ||||| || |||||||||| Sbjct 30109 CAGCGTCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCCGACTACAAC 30168 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || ||||||||| | ||| |||| || || Sbjct 30169 ATTCAGAAGGAGTCGACGTTGCACCTTGT 30197 Score = 104 bits (114), Expect = 2e-17 Identities = 138/189 (73%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 || || ||||| || ||||| | || || || | | |||| | | | |||| |||| Sbjct 29326 CTTACCGGCAAGACGATCACTCTTGAGGTTGAGTCTTCGGACACCATCGACAACG-TCAA 29384 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 || || || | ||||| ||||||||||| | |||||||| || ||||||| || || Sbjct 29385 GGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAGCAGCGTCTCATCTTTGCCGG 29444 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCT 40889 ||| ||||| || |||| || ||||| |||||||||||||| |||||| | || || Sbjct 29445 CAAGCAGCTCGAGGACGGTCGTACCCTTTCGGACTACAACATCCAAAAGGAGTCGACCCT 29504 Query 40890 GCATCTAGT 40898 ||||| || Sbjct 29505 TCATCTTGT 29513 >seq10 Length=927812 Score = 143 bits (158), Expect = 3e-29 Identities = 152/198 (77%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 40702 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGT-GCA 40760 || || || ||||||||||| || |||||| |||| || || | |||||| | | | Sbjct 76913 GTCAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGTCCGACACCATCGAC 76972 Query 40761 AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCAT 40820 |||| |||||| || || | ||||| |||||||||||| | |||||||| || ||||| Sbjct 76973 AACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTCAT 77031 Query 40821 CTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGA 40880 || ||| ||||| ||||| || |||| |||||||| |||||||||||||||||||| Sbjct 77032 CTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAACATCCAGAAGGA 77091 Query 40881 GGCCACGCTGCATCTAGT 40898 | | || || || || || Sbjct 77092 GTCGACCCTCCACCTCGT 77109 >seq1 Length=3521688 Score = 109 bits (120), Expect = 6e-19 Identities = 126/167 (75%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 40702 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA- 40760 || || || ||||| ||||| ||||||||| |||| ||||| | | |||| | | Sbjct 2364971 GTTAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCGGACACGATCGAC 2364912 Query 40761 AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCAT 40820 |||| |||||| || || | ||||| |||||||||||| | |||||||| || ||||| Sbjct 2364911 AACG-TCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGTCTCAT 2364853 Query 40821 CTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 || ||| ||||| ||||| || |||| |||||||| ||||||| Sbjct 2364852 CTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACA 2364806 >seq8 Length=1386445 Score = 98.7 bits (108), Expect = 1e-15 Identities = 148/208 (71%), Gaps = 3/208 (1%) Strand=Plus/Minus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 |||||||||| |||||||| | ||| | | || | |||| ||| || | | Sbjct 725293 AGAAGGCCGACTGGGCGCTCAAGTACATCACGAAC-GACATGCCG--TTCCGCACTAGAC 725237 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 || | ||||| ||| || |||||| ||||||| ||||| || || ||||| || | Sbjct 725236 TGATCGCCTTTGCGTGTGTGGAGGGCATCTTCTTCTCGGGATCATTTGCTGCCATCTTCT 725177 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||||||||| ||||| ||||||| ||||| || ||| || ||||| ||||| | | Sbjct 725176 GGCTCAAGAAGCGCGGTCTCATGCGTGGCCTTACATTCTCGAATGAGCTTATCTCTCGAG 725117 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTG 117189 | |||||| | || ||||||||| || Sbjct 725116 ATGAGGGTATTCACACCGACTTTGCGTG 725089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218807145360