Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20montevideense_20[genbank_20GCA_5F001598995.1_202016- 03-01] 61 sequences; 24,872,216 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq10 113 5e-20 seq7 109 6e-19 seq1 91.5 2e-13 >seq10 Length=927812 Score = 113 bits (124), Expect = 5e-20 Identities = 135/181 (75%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || || |||| || |||||||| || ||||| Sbjct 77092 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 77033 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||||| || | || |||||||||| ||| || |||| ||| Sbjct 77032 GATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 76974 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| ||| ||||| |||| ||||| || |||||||| || ||||| | Sbjct 76973 TGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGA 76914 Query 43171 C 43171 | Sbjct 76913 C 76913 >seq7 Length=1425097 Score = 109 bits (120), Expect = 6e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 42986 TGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACC 43045 |||| |||||| || || ||||| || | || || || |||| || |||||||| || Sbjct 29958 TGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGACCGTCTTCAAGCTGCTTGCC 29899 Query 43046 AGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTT 43105 || || ||||| ||||||||||||| || | || |||||||||| ||| | || | | Sbjct 29898 GGCAAAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCC-TGAATCTTCGCCT 29840 Query 43106 GAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCG 43164 ||| | | | |||||| ||| || || |||| |||||||| ||||| || || | Sbjct 29839 TCACGTTGTCGATAGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGAG 29780 Query 43165 TCTTTACAAAGATTTGCAT 43183 |||| || || || ||||| Sbjct 29779 TCTTGACGAAAATCTGCAT 29761 Score = 109 bits (120), Expect = 6e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 42981 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 43040 ||||| || |||||| ||||| ||||| || | ||||| || |||| || |||||| Sbjct 30191 TGCAACGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGCTGC 30132 Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100 || || ||||| ||||| ||||||||||||| || | || |||||||||| ||| || Sbjct 30131 TTGCCCGCGAAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTC 30072 Query 43101 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 43160 || | | | | |||||| ||| || || || | ||||| || ||||| || Sbjct 30071 GCCTTCACATTGTCGATAGTGTCGGACGACTCAACTTCAAGAGTGATAGTCTTGCCAGTG 30012 Query 43161 AGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || || || ||||| Sbjct 30011 AGGGTCTTGACGAAAATCTGCAT 29989 Score = 98.7 bits (108), Expect = 1e-15 Identities = 134/182 (74%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || || |||| || |||||||| || || || Sbjct 29215 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCAAA 29156 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 ||||| ||||||||||||| ||| | || |||||||||| ||| | || | |||| || Sbjct 29155 GATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC-TGAATCTTGGCCTTGA-CG 29098 Query 43111 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169 | | | | ||||| || || || || | |||||||| |||||||| || ||||| Sbjct 29097 TTGTCGATGGTGTCCGAAGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTG 29038 Query 43170 AC 43171 || Sbjct 29037 AC 29036 Score = 96.9 bits (106), Expect = 4e-15 Identities = 141/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || || || || | || || || |||| || |||||||| || || || Sbjct 29724 CTCCTTCTGGATGTTATAGTCCGAGAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCAAA 29665 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 ||||| ||||||||||||| ||| | || |||||||||| ||| | || | |||| || Sbjct 29664 GATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC-TGAATCTTGGCCTTGA-CG 29607 Query 43111 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169 | | | | ||||| || || || || | |||||||| ||||| || || ||||| Sbjct 29606 TTGTCGATGGTGTCCGAAGACTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTG 29547 Query 43170 ACAAAGATTTGCAT 43183 || || || ||||| Sbjct 29546 ACGAAAATCTGCAT 29533 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||| || ||||| || | || || || |||| || |||||||| || || || Sbjct 29496 CTCCTTTTGGATGTTGTAGTCCGAAAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCAAA 29437 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099 ||||| ||||||||||||| ||| | || |||||||||| ||| || Sbjct 29436 GATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTT 29389 >seq1 Length=3521688 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/167 (73%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 43006 TGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCT 43065 |||| || | || || || |||| || |||||||| || ||||| ||||| ||||||| Sbjct 2364806 TGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCT 2364865 Query 43066 GGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCG 43124 |||| | || | || |||||||||| ||| || |||| ||| | | | |||||| Sbjct 2364866 GGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGA-CGTTGTCGATCGTGTCC 2364924 Query 43125 CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 ||| || || |||| |||||||| ||||| || || ||||| || Sbjct 2364925 GACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTAAC 2364971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817163989080