Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20montevideense_20[genbank_20GCA_5F001598995.1_202016- 03-01] 61 sequences; 24,872,216 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq7 125 5e-24 seq10 102 5e-17 seq1 96.9 2e-15 >seq7 Length=1425097 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || || ||||| | || || ||||| ||||||||||| || Sbjct 29987 CCACCACGCAGGCGGAGAACGAGGTGAAGTGTGGACTCCTTCTGGATGTTGTAGTCCGAG 29928 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | ||||||||| || || ||||| |||||||||||| ||| Sbjct 29927 AGGGTACGACCGTCTTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGA 29868 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | | || | |||| ||| ||||| Sbjct 29867 ATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCGATAGTGTCGGACGACTCGACC 29808 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| |||||||| || || || |||||||| Sbjct 29807 TCGAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAAATCTGCAT 29761 Score = 125 bits (138), Expect = 5e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| || || || ||||| |||||||||||||| || ||| |||| Sbjct 30200 AGGACAAGGTGCAACGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCC 30141 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| ||||| ||||| |||||||||||| ||| | || ||||||||| Sbjct 30140 TCGAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCC 30081 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | | || | |||| ||| || || || | ||||| || Sbjct 30080 TGGATCTTCGCCTTCACATTGTCGATAGTGTCGGACGACTCAACTTCAAGAGTGATAGTC 30021 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| ||||| || || || || |||||||| Sbjct 30020 TTGCCAGTGAGGGTCTTGACGAAAATCTGCAT 29989 Score = 105 bits (116), Expect = 4e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||| ||||| || || ||| |||| || | ||||||||| || || Sbjct 29723 TCCTTCTGGATGTTATAGTCCGAGAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCAAAG 29664 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||| |||||||||||| || | || ||||||||| ||||| ||| | | | Sbjct 29663 ATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTG 29604 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | || ||||| || | |||||||| ||||| |||||||| || || Sbjct 29603 TCGATGGTGTCCGAAGACTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACG 29544 Query 34379 AAGATCTGCAT 34389 || |||||||| Sbjct 29543 AAAATCTGCAT 29533 Score = 89.7 bits (98), Expect = 3e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| || || ||| |||| || | ||||||||| || || Sbjct 29214 TCCTTCTGGATGTTGTAGTCCGAGAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCAAAG 29155 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||| |||||||||||| || | || ||||||||| ||||| ||| | | | Sbjct 29154 ATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTG 29095 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | || | || ||||| || | |||||||| ||||| || || || || || Sbjct 29094 TCGATGGTGTCCGAAGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGAC 29036 >seq10 Length=927812 Score = 102 bits (112), Expect = 5e-17 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| || || ||| |||| || | ||||||||| ||||| Sbjct 77091 TCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 77032 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||| |||||||||||| ||| | || ||||||||| ||||| ||| | | | Sbjct 77031 ATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 76972 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | |||| ||| || || || | ||||| || ||||| ||||| || || || Sbjct 76971 TCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGAC 76913 >seq1 Length=3521688 Score = 96.9 bits (106), Expect = 2e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 34212 TGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCT 34271 ||||||| || || ||| |||| || | ||||||||| ||||| ||||| ||||||| Sbjct 2364806 TGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCT 2364865 Query 34272 GGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGG 34331 |||| ||| | || ||||||||| ||||| ||| | | | | |||| || | Sbjct 2364866 GGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATCGTGTCCG 2364925 Query 34332 TCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 ||| ||||| || | |||||||| ||||||||||| || || || Sbjct 2364926 ACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTAAC 2364971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071759816160