Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20montevideense_20[genbank_20GCA_5F001598995.1_202016- 03-01] 61 sequences; 24,872,216 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq6 187 5e-42 seq10 86.0 1e-11 >seq6 Length=1458149 Score = 187 bits (206), Expect = 5e-42 Identities = 606/927 (65%), Gaps = 32/927 (3%) Strand=Plus/Plus Query 248818 TACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAG 248877 ||| | | ||| | |||||| || || ||| || |||||| | ||||| |||||| Sbjct 934502 TACAACTACTTCGGTTTCAAGACCCTCGAGCGCTCATATCTCTTGCGCATTGACGGCAAG 934561 Query 248878 ATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGAC 248937 | | || || ||||||||| | ||||| || | |||| || ||| || || Sbjct 934562 GTGGCCGAGCGTCCGCAGCACATGATTATGCGTGTTTCCATCGGTATCCACGGTGACAAC 934621 Query 248938 ATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACA 248997 || || | || | |||||||||| | ||| || |||| | || || || | Sbjct 934622 ATCGACAAGGTCATTGAGACGTACAACCTCATGTCCGAGCGCTACTTCACTCACGCTTCC 934681 Query 248998 CCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCC 249057 ||||| ||||||||||| ||||| | || |||| || |||||||| || | || Sbjct 934682 CCGACCCTCTTCAACGCTGGTACTCCCCACCCTCAGATGTCGTCGTGCTTCCTCGTCGCT 934741 Query 249058 ATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAA-ACAGACGGCGAAGATTTC 249116 ||| | |||||||| |||||||||| || ||||| || || || | || |||| || Sbjct 934742 ATGAAGGACGACTCGATCGACGGCATCTACGACACCCTCAAGACCTGC-GCCCAGATCTC 934800 Query 249117 TAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACAT 249176 || || || || || |||||| | | |||||| || || ||||| |||||||| Sbjct 934801 CAAGACTGCTGGTGGCATTGGTCTCCACATTCACAACATTCGTGCCAAGGGCTCGTACAT 934860 Query 249177 CAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCAC 249236 | || || || || | | ||||| || ||| | || || || || | || Sbjct 934861 CGCCGGAACCAACGGTTACTCCAACGGTATTGTCCCCATGCTCCGTGCCTACGACGCGAC 934920 Query 249237 CGCCAGGTTCATCAACCAGGCCGG------GCGCCGAAAGGGGTCGTTCGCCATGTATTT 249290 |||| | | | || |||||| || ||||| || | || ||||| || | Sbjct 934921 CGCCCGTTACGTCGACCAGGGTGGCAACAAGCGCC---CTGGTGCCTTTGCCATCTACCT 934977 Query 249291 GGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGA 249350 || ||||| || || | || || ||||| ||| | |||||| |||| || || Sbjct 934978 TGAGCCCTGGCATGCGGACGTTTTCGACTTCCTTGACCTCCGCAAGAACCACGGAAAGGA 935037 Query 249351 GCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCG 249410 | | | ||||||||||| ||||||| || |||||| | ||| | |||||| || Sbjct 935038 GGAGGTTCGCGCGCGTGACCTGTTCTACGCTCTCTGGGTCCCTGACCTCTTCATGAAGCG 935097 Query 249411 CGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGA-CGCCCCGGACCT--CAT 249467 ||| |||||||||| || ||||| || | | || |||| |||| || | | | Sbjct 935098 TGTCGAGGCCGACGGTGACTGGACCCTCATGTGCCCCGCCGAGTGCCCTGGTCTTGCCGA 935157 Query 249468 CGATCTACACGGCGCCGACTTCGACCAAGCCTATA--AGAAATACGAATCCAACGGCATC 249525 || || || ||| | || || || | ||| || |||| ||||| | |||| Sbjct 935158 CGTTC-ACTCGGAG--GAGTTTGA--GACCCTGTACCAGAAGTACGAGCGTGAGGGCAAG 935212 Query 249526 G---GCAAGACAATCAAGGCTCGGACCCT---TTTTGCGAAGGTGGTGGAGTCCCAGATA 249579 | ||||||| |||||||| | || || || || | | | ||| |||||| Sbjct 935213 GGTCGCAAGACCATCAAGGCCCAGAAGCTCTGGTTCGCCA---TCCTTGAGGCCCAGACC 935269 Query 249580 GAGACAGGGGGGCCGTATTAT-TTGTTCAAAGACGCGTGCAACGCCAAGAGTAACCAACG 249638 ||||| || || || | | || | | ||| ||||| |||| |||| |||||| | Sbjct 935270 GAGACTGGTGGCCCCT-TCATCCTCTACAAGGACGCTGCCAACCGCAAGTCTAACCAGCA 935328 Query 249639 GCATCTTGGTACCATCCGCTCGTCAAATCTCTGTGCAGAGGTGATTCAATACTCGTCCAA 249698 ||| || || || ||| ||||| || ||||| | ||| | || | ||||| || Sbjct 935329 GCACCTGGGCACTATCAAGTCGTCCAACCTCTGCACTGAGATCATCGAGTACTCTTCTCC 935388 Query 249699 GGAGGAGATTGCCGTCTGCAACCTGGC 249725 || ||| |||||||||||||||| || Sbjct 935389 CGACGAGGTTGCCGTCTGCAACCTTGC 935415 >seq10 Length=927812 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/138 (75%), Gaps = 4/138 (3%) Strand=Plus/Plus Query 254031 GGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAACCCTGTTGGGCGAGGGGAAC 254090 ||||| || |||||||| || ||||| ||||| || || | |||| ||| | | || Sbjct 186489 GGAACCGGAAAGACGTCTACGATCCTCGCGCTCGCGCGCAGGCTGTACGGCCCCGCGTAC 186548 Query 254091 ATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGAACGCGGGTTGGACGTCGTCCGC 254150 || ||| | | |||||||||||||| || ||||| ||||| | || ||||||||| Sbjct 186549 CGGA---AGCACATTCTCGAGCTGAACGCGTCCGACGACCGCGGCATTGATGTCGTCCGC 186605 Query 254151 GACAAGATCAAGA-CTTT 254167 || ||||||||| |||| Sbjct 186606 GAGCAGATCAAGAGCTTT 186623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073765560784448