Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20montevideense_20[genbank_20GCA_5F001598995.1_202016- 03-01] 61 sequences; 24,872,216 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq6 325 4e-84 seq7 168 6e-37 seq10 89.7 5e-13 seq1 89.7 5e-13 >seq6 Length=1458149 Score = 325 bits (360), Expect = 4e-84 Identities = 641/943 (68%), Gaps = 4/943 (0%) Strand=Plus/Minus Query 23020 GGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTC 23079 ||| || |||||||| ||||| ||||| |||||||| || | |||||| | || || Sbjct 935425 GGCAATGGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGAGAAGAGTACTCGATGATCTC 935366 Query 23080 GGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCT-CTGGTTGCTTTTTCGATTGC 23138 || || || ||| |||| || ||||||| | ||| |||||| || || ||| Sbjct 935365 AGTGCAGAGGTTGGACGACTTGATAGTGCCCAGGT-GCTGCTGGTTAGACTTGCGGTTGG 935307 Query 23139 ACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTC 23198 | ||||||||||| ||| | || || |||||| ||| | ||| | ||| || Sbjct 935306 CAGCGTCCTTGTAGAGGATGAAGGGGCCACCAGTCTCGGTCTGGGCCTCAAGGATGGCGA 935247 Query 23199 GCCACATAGTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGG 23257 ||| | |||| || | | ||| || ||| ||| || ||||||||| ||| Sbjct 935246 ACCAGAGCTTCTGGGCCTTGATG-GTCTTGCGACCCTTGCCCTCACGCTCGTACTTCTGG 935188 Query 23258 TACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACAC 23317 |||| | ||||| || | || | |||||| || || || | | || ||| Sbjct 935187 TACAGGGTCTCAAACTCCTCCGAGTGAACGTCGGCAAGACCAGGGCACTCGGCGGGGCAC 935128 Query 23318 ATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGA 23377 ||||| |||| ||| || || || |||| || || || || | ||| ||| Sbjct 935127 ATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTTCATGAAGAGGTCAGGGACCCAGAGA 935068 Query 23378 GCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAA 23437 ||||||||||| || || ||||| |||||||| || ||| |||||| | || | Sbjct 935067 GCGTAGAACAGGTCACGCGCGCGAACCTCCTCCTTTCCGTGGTTCTTGCGGAGGTCAAGG 935008 Query 23438 AAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTA 23497 ||||| || |||||||||||||| ||||| ||||| | |||||| || || || | ||| Sbjct 935007 AAGTCGAAAACGTCCGCATGCCAGGGCTCAAGGTAGATGGCAAAGGCACCAGGGCGCTTG 934948 Query 23498 TTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGA 23557 ||||| ||||| |||||||||||||| || || ||| | | ||||| || || | | Sbjct 934947 TTGCCACCCTGGTCGACGTAACGGGCGGTCGCGTCGTAGGCACGGAGCATGGGGACAATA 934888 Query 23558 CCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACG 23617 |||||||| ||| || || | ||| || || || |||| |||||||| | Sbjct 934887 CCGTTGGAGTAACCGTTGGTTCCGGCGATGTACGAGCCCTTGGCACGAATGTTGTGAATG 934828 Query 23618 TGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAG 23677 |||| ||| ||||| || | | || || ||| ||||| || || ||||||||| Sbjct 934827 TGGAGACCAATGCCACCAGCAGTCTTGGAGATCTGGGCGCAGGTCTTGAGGGTGTCGTAG 934768 Query 23678 ATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTG 23737 ||||| ||||| ||| || || | ||||| | ||| ||||| ||||| || | | | Sbjct 934767 ATGCCGTCGATCGAGTCGTCCTTCATAGCGACGAGGAAGCACGACGACATCTGAGGGTGG 934708 Query 23738 GGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGA 23797 || ||| | || ||| || |||||| ||||| || ||||| | | ||||| || Sbjct 934707 GGAGTACCAGCGTTGAAGAGGGTCGGGGAAGCGTGAGTGAAGTAGCGCTCGGACATGAGG 934648 Query 23798 TTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATC 23857 |||||||| || ||| | || |||| || ||||| |||||||||| || ||||| Sbjct 934647 TTGTACGTCTCAATGACCTTGTCGATGTTGTCACCGTGGATACCGATGGAAACACGCATA 934588 Query 23858 ATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGC 23917 ||||||| || || | |||| || ||||| ||| || |||||||| || | Sbjct 934587 ATCATGTGCTGCGGACGCTCGGCCACCTTGCCGTCAATGCGCAAGAGATATGAGCGCTCG 934528 Query 23918 ATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGT 23960 | || || || || || |||| ||| |||||||| |||| Sbjct 934527 AGGGTCTTGAAACCGAAGTAGTTGTAGGCGAAGTCACGGTCGT 934485 >seq7 Length=1425097 Score = 168 bits (186), Expect = 6e-37 Identities = 352/520 (68%), Gaps = 16/520 (3%) Strand=Plus/Plus Query 57879 CTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAA 57938 || ||||| || ||||| || || ||| ||| |||||||| || ||| | || Sbjct 37271 CTCTTCAAGGCCATCGAGACCATCCCCTGCATCAAGAAGAAGGCCGACTGGGCCCTCCGT 37330 Query 57939 TGGATA----AAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGT 57994 ||||| | ||||| || || || || ||| | || || |||||||||||||| Sbjct 37331 TGGATTTCCGACGAGCGCT-CGTCC---TTTGCTGAGCGCCTCATTGCGTTCGCCGCCGT 37386 Query 57995 CGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCT 58054 ||| ||||| || || || ||| ||||| | || || ||| | ||||| || ||||| Sbjct 37387 CGAGGGTATCTTTTTCTCTGGCTCGTTTGCCTCGATCTTCTGGCTCAAGAAGCGTGGCCT 37446 Query 58055 GATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGA 58114 ||||||||||| || || ||||||| | || ||||| |||||||||||||| || || Sbjct 37447 CATGCCCGGCCTCACTTTCTCCAACGAGCTCATCTCGCGTGACGAGGGTCTCCACACCGA 37506 Query 58115 TTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGA 58174 ||||| || || | | | | || | | | ||| | | | ||| | | Sbjct 37507 CTTTGCCTGTCTGCTTTTCACCCATCTCCGCCGTCGCCCGCACCCCAACCTCATTGAGAA 37566 Query 58175 CATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGC 58234 |||||| |||||| ||| ||| ||| | ||||| | ||||| || || || ||| | Sbjct 37567 GATTATCCGCGAGGCCGTCAAGATTGAACAGGAGTTCCTTACCGAGGCGCTCCCCGTGTC 37626 Query 58235 CATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACT 58294 | ||||||||||| | | | |||| | ||||||||||| || |||||| | Sbjct 37627 GCTCATCGGTATGAACGCCGGTCTCATGTGCCAATACATTGAGTTCGTCGCCGAC---CG 37683 Query 58295 TTTGCTCGAACTGATTGGAGAGCGTCA----TTACAACACGAAAAATCCGTTTGATTTTA 58350 | |||||| |||| | || || |||||| ||| ||||| || || |||| Sbjct 37684 TCTGCTCGTCGCTCTTGG-CAACGACAAGATCTACAACTCGACGAATCCCTTCGACTTTA 37742 Query 58351 TGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGA 58390 || | ||||||| || | |||||| | ||||| ||||| Sbjct 37743 TGGAGATGATCTCTCTGCAAGGCAAGGCCAACTTCTTCGA 37782 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| |||||||| || ||||| || |||||| |||| || || ||||| Sbjct 29761 ATGCAGATTTTCGTCAAGACTCTCACTGGCAAGACCATCACCCTCGAGGTCGAGTCGTCC 29820 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| | || || || || ||||||||| ||| | || ||||||||| Sbjct 29821 GACACTATCGACAACGTGAAGGCGAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAG 29880 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || || ||||| ||| | |||||| | || | || || ||| Sbjct 29881 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAAGACGGTCGTACCCTCTCGGACTACAAC 29940 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || || ||||| || || || | ||| | || |||| Sbjct 29941 ATCCAGAAGGAGTCCACACTTCACCTCGTTCTCCGCCTGCGTGGTGGTA 29989 Score = 118 bits (130), Expect = 9e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| || || ||||| || ||||| | || ||||| ||||| Sbjct 29989 ATGCAGATTTTCGTCAAGACCCTCACTGGCAAGACTATCACTCTTGAAGTTGAGTCGTCC 30048 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| | || || || || ||||||||| ||| | || ||||||||| Sbjct 30049 GACACTATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 30108 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||| ||||| ||| | || ||| ||| | ||| || ||| Sbjct 30109 CAGCGTCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCCGACTACAAC 30168 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||| || || ||||| | || || || ||| Sbjct 30169 ATTCAGAAGGAGTCGACGTTGCACCTTGTCCTT 30201 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| |||||||| || ||||| || |||||| | || || || | || Sbjct 29533 ATGCAGATTTTCGTCAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTCGAGTCTTCG 29592 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||| ||| | |||||||||||| Sbjct 29593 GACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCAG 29652 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || || ||||| ||| | || ||| | || | || |||||| Sbjct 29653 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGTCGTACCCTCTCGGACTATAAC 29712 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || ||||| |||||||| || || Sbjct 29713 ATCCAGAAGGAGTCGACCCTTCATCTTGTCCT 29744 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 31214 CTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAA 31273 || || ||||| |||||||| | || ||||| | || |||| |||| | ||||| Sbjct 29326 CTTACCGGCAAGACGATCACTCTTGAGGTTGAGTCTTCGGACACCATCGACAACGTCAAG 29385 Query 31274 CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGC 31333 | || ||||||||| ||| | |||||||||||||||||||| || || || ||| Sbjct 29386 GCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAGCAGCGTCTCATCTTTGCCGGC 29445 Query 31334 AAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTT 31393 || ||| | || ||| | || | || || ||||| ||||| || ||||| ||| Sbjct 29446 AAGCAGCTCGAGGACGGTCGTACCCTTTCGGACTACAACATCCAAAAGGAGTCGACCCTT 29505 Query 31394 CATCTGGTACT 31404 ||||| || || Sbjct 29506 CATCTTGTCCT 29516 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 31205 GTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAA 31264 || ||||| || || ||||| || |||||| | || || || | || |||| |||| Sbjct 29036 GTCAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTCGAGTCTTCGGACACCATCGAC 29095 Query 31265 ACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATA 31324 | ||||| | || ||||||||| ||| | |||||||||||||||||||| || Sbjct 29096 AACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCAGCAGCGTCTCATC 29155 Query 31325 TTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAA 31384 || || ||||| ||| | || ||| | || | || || ||||| || || || Sbjct 29156 TTTGCCGGCAAGCAGCTCGAGGACGGTCGTACCCTCTCGGACTACAACATCCAGAAGGAG 29215 Query 31385 TCGACTCTTCATCTGGTACT 31404 ||||| |||||||| || || Sbjct 29216 TCGACCCTTCATCTCGTTCT 29235 >seq10 Length=927812 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 31205 GTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAA 31264 || ||||| || || ||||| || |||||| |||| || || ||||||||| |||| Sbjct 76913 GTCAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGTCCGACACCATCGAC 76972 Query 31265 ACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATA 31324 | ||||| | || ||||||||| ||| | || |||||||||||||| || || Sbjct 76973 AACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTCATC 77032 Query 31325 TTCGCTGGCAAACAGTTGGAAGAC 31348 ||||| ||||| ||| | || ||| Sbjct 77033 TTCGCCGGCAAGCAGCTCGAGGAC 77056 >seq1 Length=3521688 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 31205 GTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAA 31264 || ||||| || || ||||| || |||||| |||| || || |||| |||| |||| Sbjct 2364971 GTTAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCGGACACGATCGAC 2364912 Query 31265 ACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATA 31324 | ||||| || || ||||||||| ||| | || || |||||||||||||| || Sbjct 2364911 AACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGTCTCATC 2364852 Query 31325 TTCGCTGGCAAACAGTTGGAAGAC 31348 ||||| ||||| ||| | || ||| Sbjct 2364851 TTCGCCGGCAAGCAGCTCGAGGAC 2364828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766060103120