Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20montevideense_20[genbank_20GCA_5F001598995.1_202016- 03-01] 61 sequences; 24,872,216 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq7 114 2e-20 seq6 107 2e-18 seq8 82.4 1e-10 >seq7 Length=1425097 Score = 114 bits (126), Expect = 2e-20 Identities = 178/252 (71%), Gaps = 3/252 (1%) Strand=Plus/Minus Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637 || ||| || || ||| ||| ||||||||||| | || | ||||| || || || Sbjct 37519 CAGACAGGCAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAAGT 37460 Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697 ||| |||||||| ||||||||||| || ||||| || || || || || || || || || Sbjct 37459 GAGGCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATCGAGGCAAACGAGCCAGAGAA 37400 Query 33698 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA--ACCGGCGCT-GTC 33754 ||||| || || || || || || ||||| || | ||| || | || ||||| ||| Sbjct 37399 AAAGATACCCTCGACGGCGGCGAACGCAATGAGGCGCTCAGCAAAGGACGAGCGCTCGTC 37340 Query 33755 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33814 ||||| | ||||| ||||||||||| || | || || || || || ||||| Sbjct 37339 GGAAATCCAACGGAGGGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGC 37280 Query 33815 ATTAAAGAGATA 33826 || ||||| || Sbjct 37279 CTTGAAGAGGTA 37268 >seq6 Length=1458149 Score = 107 bits (118), Expect = 2e-18 Identities = 428/671 (64%), Gaps = 2/671 (0%) Strand=Plus/Minus Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63280 ||| || || | || ||||| | | ||| || ||||| ||| || || ||||| || Sbjct 935146 AGGGCACTCGGCGGGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTTCATGAA 935087 Query 63281 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340 ||| ||||| | ||| ||||| || || || | | | | ||||| ||||| Sbjct 935086 GAGGTCAGGGACCCAGAGAGCGTAGAACAGGTCACGCGCGCGAACCTCCTCCTTTCCGTG 935027 Query 63341 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400 ||||| || || ||||| | | || || | |||||| || || | ||| ||||| Sbjct 935026 GTTCTTGCGGAGGTCAAGGAAGTCGAAAACGTCCGCATGCCAGGGCTCAAGGTAGATGGC 934967 Query 63401 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63460 | | ||||| || ||||| || ||||| || | ||| | ||||| | || | Sbjct 934966 AAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCGACGTAACGGGCGGTCGCGTCGTAGGC 934907 Query 63461 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACT 63520 | | ||| || | ||||||||| || ||| ||||| |||| ||| || || | Sbjct 934906 ACGGAGCATGGGGACAATACCGTTGGAGTAACCGTTGGTTCCGGCGATGTACGAGCCCTT 934847 Query 63521 GGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 63580 ||||||||| || ||| ||||| || || || || | || ||||| ||||| Sbjct 934846 GGCACGAATGTTGTGAATGTGGAGACCAATGCCACCAGCAGTCTTGGAGATCTGGGCGCA 934787 Query 63581 TCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACA 63640 || | ||||| |||||||| || || || || |||| | || || || Sbjct 934786 GGTCTTGAGGGTGTCGTAGATGCCGTCGATCGAGTCGTCCTTCATAGCGACGAGGAAGCA 934727 Query 63641 GCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 63700 ||||| || | | | ||| || || || || | ||| || |||||||| || || Sbjct 934726 CGACGACATCTGAGGGTGGGGAGTACCAGCGTTGAAGAGGGTCGGGGAAGCGTGAGTGAA 934667 Query 63701 CCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTAT-ATCCCATTGATGAA 63759 | || || | || |||||||||||||| | ||| || | || | || | Sbjct 934666 GTAGCGCTCGGACATGAGGTTGTACGTCTCAATGACCTTGTCGATGTTGTCACCG-TGGA 934608 Query 63760 TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTT 63819 | || | | |||||||| | ||||||||| || | || | | ||| || || Sbjct 934607 TACCGATGGAAACACGCATAATCATGTGCTGCGGACGCTCGGCCACCTTGCCGTCAATGC 934548 Query 63820 TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 63879 ||| | || || || | || || ||||| || |||||||| | ||||| || | Sbjct 934547 GCAAGAGATATGAGCGCTCGAGGGTCTTGAAACCGAAGTAGTTGTAGGCGAAGTCACGGT 934488 Query 63880 CGTAAATAATA 63890 |||| || ||| Sbjct 934487 CGTAGATTATA 934477 >seq8 Length=1386445 Score = 82.4 bits (90), Expect = 1e-10 Identities = 148/210 (70%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || || ||| ||| | |||||| |||| | || | || || || || || || Sbjct 725089 CACGCAAAGTCGGTGTGAATACCCTCATCTCGAGAGATAAGCTCATTCGAGAATGTAAGG 725148 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || |||| || || ||||| || ||||| || |||| ||| |||||||| || |||||| Sbjct 725149 CCACGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGCAGCAAATGATCCCGAGAAGAAG 725208 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT--GT- 33758 || || || || |||||||| || ||||| | | ||| ||| |||| | || Sbjct 725209 ATGCCCTCCACACACGCAAAGGCGATCAGTCTAG-TGCGGAAC-GGCA-TGTCGTTCGTG 725265 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTT 33788 || |||| | ||||| |||||||||||| Sbjct 725266 ATGTACTTGAGCGCCCAGTCGGCCTTCTTT 725295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817119764080