Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20montevideense_20[genbank_20GCA_5F001598995.1_202016- 03-01] 61 sequences; 24,872,216 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq7 120 4e-22 seq6 98.7 1e-15 seq8 87.8 2e-12 >seq7 Length=1425097 Score = 120 bits (132), Expect = 4e-22 Identities = 179/252 (71%), Gaps = 3/252 (1%) Strand=Plus/Minus Query 36154 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 36213 || ||| || || ||| ||| ||||||||||| | || | |||||||| || || Sbjct 37519 CAGACAGGCAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAAGT 37460 Query 36214 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAA 36273 ||| |||||||| ||||||||||| || ||||| || || || ||||| || ||||| || Sbjct 37459 GAGGCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATCGAGGCAAACGAGCCAGAGAA 37400 Query 36274 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA--ACCGGCACT-GTC 36330 || || || || || || || || ||||| || | ||| || | || || || ||| Sbjct 37399 AAAGATACCCTCGACGGCGGCGAACGCAATGAGGCGCTCAGCAAAGGACGAGCGCTCGTC 37340 Query 36331 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 36390 ||||| | ||||| ||||||||||| || | || || || ||||| || || Sbjct 37339 GGAAATCCAACGGAGGGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGC 37280 Query 36391 ATTAAAGAGATA 36402 || ||||| || Sbjct 37279 CTTGAAGAGGTA 37268 >seq6 Length=1458149 Score = 98.7 bits (108), Expect = 1e-15 Identities = 427/673 (63%), Gaps = 2/673 (0%) Strand=Plus/Minus Query 66012 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 66071 ||||| || || | || ||||| | | ||| || ||||| ||| || || ||||| Sbjct 935148 CCAGGGCACTCGGCGGGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTTCATG 935089 Query 66072 AAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCT 66131 ||||| ||||| | ||| ||||| || | || | | | | ||||| ||||| Sbjct 935088 AAGAGGTCAGGGACCCAGAGAGCGTAGAACAGGTCACGCGCGCGAACCTCCTCCTTTCCG 935029 Query 66132 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATG 66191 ||||| || || ||||| | | || || |||||| || || | ||| ||| Sbjct 935028 TGGTTCTTGCGGAGGTCAAGGAAGTCGAAAACGTCCGCATGCCAGGGCTCAAGGTAGATG 934969 Query 66192 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 66251 || | | ||||| || ||||| || ||||| || | ||| | ||||| | || Sbjct 934968 GCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCGACGTAACGGGCGGTCGCGTCGTAG 934909 Query 66252 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 66311 | | | ||| || | |||||| ||||| ||| ||||| |||| ||| || || Sbjct 934908 GCACGGAGCATGGGGACAATACCGTTGGAGTAACCGTTGGTTCCGGCGATGTACGAGCCC 934849 Query 66312 CTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 66371 | |||||||| || ||| ||||| || || || || | || ||||| ||| Sbjct 934848 TTGGCACGAATGTTGTGAATGTGGAGACCAATGCCACCAGCAGTCTTGGAGATCTGGGCG 934789 Query 66372 CATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 66431 || || | || || |||||||| || || || ||| |||| | || || Sbjct 934788 CAGGTCTTGAGGGTGTCGTAGATGCCGTCGATCGAGTCGTCCTTCATAGCGACGAGGAAG 934729 Query 66432 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 66491 || ||||| || | | ||| || || || || | ||| || |||||||| || Sbjct 934728 CACGACGACATCTGAGGGTGGGGAGTACCAGCGTTGAAGAGGGTCGGGGAAGCGTGAGTG 934669 Query 66492 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTAT-ATCCCATTGATG 66550 || | || || | || |||||||||||||| | ||| || | || | || Sbjct 934668 AAGTAGCGCTCGGACATGAGGTTGTACGTCTCAATGACCTTGTCGATGTTGTCACCG-TG 934610 Query 66551 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 66610 || || | | |||||||| | ||||||||| || | || | | |||| || || Sbjct 934609 GATACCGATGGAAACACGCATAATCATGTGCTGCGGACGCTCGGCCACCTTGCCGTCAAT 934550 Query 66611 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 66670 ||| | || || || | || || ||||| || |||||||| | ||||| || Sbjct 934549 GCGCAAGAGATATGAGCGCTCGAGGGTCTTGAAACCGAAGTAGTTGTAGGCGAAGTCACG 934490 Query 66671 TTCGTAAATAATA 66683 ||||| || ||| Sbjct 934489 GTCGTAGATTATA 934477 >seq8 Length=1386445 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/210 (71%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || || || ||| ||| | |||||| |||| | || | || || || || || || Sbjct 725089 CACGCAAAGTCGGTGTGAATACCCTCATCTCGAGAGATAAGCTCATTCGAGAATGTAAGG 725148 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 36277 || |||| || || ||||| || ||||| || |||| ||||||||||| || ||||| Sbjct 725149 CCACGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGCAGCAAATGATCCCGAGAAGAAG 725208 Query 36278 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCAT--GT- 36334 || || || || ||||||||| || ||||| | | || ||||| |||| | || Sbjct 725209 ATGCCCTCCACACACGCAAAGGCGATCAGTCT-AGTGCGGAA-CGGCA-TGTCGTTCGTG 725265 Query 36335 ATCCACTTTTGAGCCCAATCGGCCTTCTTT 36364 || |||| | ||||| |||||||||||| Sbjct 725266 ATGTACTTGAGCGCCCAGTCGGCCTTCTTT 725295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172298143240