Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20montevideense_20[genbank_20GCA_5F001598995.1_202016- 03-01] 61 sequences; 24,872,216 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq7 132 7e-26 seq6 104 3e-17 >seq7 Length=1425097 Score = 132 bits (146), Expect = 7e-26 Identities = 182/252 (72%), Gaps = 3/252 (1%) Strand=Plus/Minus Query 49956 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 50015 || ||| || || ||| ||| ||||||||||| | || || |||||||| || || Sbjct 37519 CAGACAGGCAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAAGT 37460 Query 50016 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAA 50075 ||| |||||||| ||||||||||| || ||||| || || || ||||| || ||||| || Sbjct 37459 GAGGCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATCGAGGCAAACGAGCCAGAGAA 37400 Query 50076 GAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATA--ACTGGCGCT-GTC 50132 ||||| || || || ||||| || |||| || | ||| || | || ||||| ||| Sbjct 37399 AAAGATACCCTCGACGGCGGCGAACGCAATGAGGCGCTCAGCAAAGGACGAGCGCTCGTC 37340 Query 50133 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192 ||||| | ||||| ||||||||||| || | || || || || || ||||| Sbjct 37339 GGAAATCCAACGGAGGGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGC 37280 Query 50193 ATTAAAGAGATA 50204 || ||||| || Sbjct 37279 CTTGAAGAGGTA 37268 >seq6 Length=1458149 Score = 104 bits (114), Expect = 3e-17 Identities = 436/686 (64%), Gaps = 2/686 (0%) Strand=Plus/Minus Query 79878 AACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTT 79937 ||| ||| | | ||||| || ||| | || ||||| | | ||| || || || ||| Sbjct 935161 AACGTCGGCAAGACCAGGGCACTCGGCGGGGCACATGAGGGTCCAGTCACCGTCGGCCTC 935102 Query 79938 TACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 79997 || || ||||| ||||| ||||| | ||| ||||| || || || | | | | Sbjct 935101 GACACGCTTCATGAAGAGGTCAGGGACCCAGAGAGCGTAGAACAGGTCACGCGCGCGAAC 935042 Query 79998 CTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 80057 |||||| ||||| ||||| || || ||||| | | || || | |||||| || Sbjct 935041 CTCCTCCTTTCCGTGGTTCTTGCGGAGGTCAAGGAAGTCGAAAACGTCCGCATGCCAGGG 934982 Query 80058 TTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGC 80117 || | ||| ||||| | | || || || ||||| || ||||| || | ||| | || Sbjct 934981 CTCAAGGTAGATGGCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCGACGTAACGGGC 934922 Query 80118 GGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGA 80177 ||| | || | | | ||| || | |||||| ||||| ||| ||||| |||| Sbjct 934921 GGTCGCGTCGTAGGCACGGAGCATGGGGACAATACCGTTGGAGTAACCGTTGGTTCCGGC 934862 Query 80178 GATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTT 80237 ||| || || |||||||||| || ||| ||||| || || || || | || Sbjct 934861 GATGTACGAGCCCTTGGCACGAATGTTGTGAATGTGGAGACCAATGCCACCAGCAGTCTT 934802 Query 80238 AGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCAT 80297 ||||| ||||| || | || || |||||||| || || || || |||| Sbjct 934801 GGAGATCTGGGCGCAGGTCTTGAGGGTGTCGTAGATGCCGTCGATCGAGTCGTCCTTCAT 934742 Query 80298 GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGG 80357 | || || || ||||| || | | ||| || || || || | ||| || Sbjct 934741 AGCGACGAGGAAGCACGACGACATCTGAGGGTGGGGAGTACCAGCGTTGAAGAGGGTCGG 934682 Query 80358 AGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTAT 80417 |||||||| || || | || |||| || |||||||||||||| | || || Sbjct 934681 GGAAGCGTGAGTGAAGTAGCGCTCGGACATGAGGTTGTACGTCTCAATGACCTTGTCGAT 934622 Query 80418 -ATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGA 80476 | || | || || || | | |||||||| | ||||||||| || | || | | Sbjct 934621 GTTGTCACCG-TGGATACCGATGGAAACACGCATAATCATGTGCTGCGGACGCTCGGCCA 934563 Query 80477 TCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGT 80536 |||| | || ||| | || || || | || || ||||| || ||||||| Sbjct 934562 CCTTGCCGTCAATGCGCAAGAGATATGAGCGCTCGAGGGTCTTGAAACCGAAGTAGTTGT 934503 Query 80537 ATGAAAAGTCTCGTTCGTAAATAATA 80562 | | ||||| || ||||| || ||| Sbjct 934502 AGGCGAAGTCACGGTCGTAGATTATA 934477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268252320040