Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20montevideense_20[genbank_20GCA_5F001598995.1_202016- 03-01] 61 sequences; 24,872,216 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq7 120 4e-22 seq6 95.1 2e-14 seq8 91.5 2e-13 >seq7 Length=1425097 Score = 120 bits (132), Expect = 4e-22 Identities = 179/252 (71%), Gaps = 3/252 (1%) Strand=Plus/Minus Query 42061 CAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGT 42120 || ||| || || ||| ||| |||||||| || | || | |||||||| || || Sbjct 37519 CAGACAGGCAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAAGT 37460 Query 42121 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAA 42180 ||| |||||||| ||||||||||| || ||||| || || || ||||| || ||||| || Sbjct 37459 GAGGCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATCGAGGCAAACGAGCCAGAGAA 37400 Query 42181 GAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA--ACCGGCACT-GTC 42237 ||||| || || || || || || ||||| || | ||| || | || || || ||| Sbjct 37399 AAAGATACCCTCGACGGCGGCGAACGCAATGAGGCGCTCAGCAAAGGACGAGCGCTCGTC 37340 Query 42238 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 42297 ||||| | ||||| ||||||||||| || | || || || || || ||||| Sbjct 37339 GGAAATCCAACGGAGGGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGC 37280 Query 42298 ATTAAAGAGATA 42309 || ||||| || Sbjct 37279 CTTGAAGAGGTA 37268 >seq6 Length=1458149 Score = 95.1 bits (104), Expect = 2e-14 Identities = 321/500 (64%), Gaps = 0/500 (0%) Strand=Plus/Minus Query 71989 GGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATC 72048 || ||||| | | ||| || || || | | || || ||||| ||||| ||||| | | Sbjct 935133 GGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTTCATGAAGAGGTCAGGGACC 935074 Query 72049 CAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGA 72108 || ||||| || || || | | | | |||||| ||||| ||||| || Sbjct 935073 CAGAGAGCGTAGAACAGGTCACGCGCGCGAACCTCCTCCTTTCCGTGGTTCTTGCGGAGG 935014 Query 72109 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGC 72168 || ||||| | | || || | |||||| || || | ||| ||||| | | || || Sbjct 935013 TCAAGGAAGTCGAAAACGTCCGCATGCCAGGGCTCAAGGTAGATGGCAAAGGCACCAGGG 934954 Query 72169 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 72228 || ||||| || ||||| || | ||| | ||||| | || | | | ||| || Sbjct 934953 CGCTTGTTGCCACCCTGGTCGACGTAACGGGCGGTCGCGTCGTAGGCACGGAGCATGGGG 934894 Query 72229 ATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTG 72288 | |||||| ||||| ||| ||||| |||| ||| || || |||||||||| ||| Sbjct 934893 ACAATACCGTTGGAGTAACCGTTGGTTCCGGCGATGTACGAGCCCTTGGCACGAATGTTG 934834 Query 72289 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA 72348 ||| ||||| || || || || | || ||||| ||||| || | || Sbjct 934833 TGAATGTGGAGACCAATGCCACCAGCAGTCTTGGAGATCTGGGCGCAGGTCTTGAGGGTG 934774 Query 72349 TCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGG 72408 || |||||||| || || || ||| |||| | || || || ||||| || Sbjct 934773 TCGTAGATGCCGTCGATCGAGTCGTCCTTCATAGCGACGAGGAAGCACGACGACATCTGA 934714 Query 72409 TGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAC 72468 | | ||| || || || || | ||| || |||||||| || || | || ||| Sbjct 934713 GGGTGGGGAGTACCAGCGTTGAAGAGGGTCGGGGAAGCGTGAGTGAAGTAGCGCTCGGAC 934654 Query 72469 AGTAGATTGTACGTCTCAAT 72488 | || |||||||||||||| Sbjct 934653 ATGAGGTTGTACGTCTCAAT 934634 >seq8 Length=1386445 Score = 91.5 bits (100), Expect = 2e-13 Identities = 150/210 (71%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || || ||| ||| | ||||||||||| | || | || || || || || || Sbjct 725089 CACGCAAAGTCGGTGTGAATACCCTCATCTCGAGAGATAAGCTCATTCGAGAATGTAAGG 725148 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 || |||| || || ||||| || ||||| || || | ||||||||||| || |||||| Sbjct 725149 CCACGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGCAGCAAATGATCCCGAGAAGAAG 725208 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCAT--GT- 42241 || || || || ||||||||| || ||||| | | || ||||| |||| | || Sbjct 725209 ATGCCCTCCACACACGCAAAGGCGATCAGTCT-AGTGCGGAA-CGGCA-TGTCGTTCGTG 725265 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTT 42271 || |||| | ||||| |||||||||||| Sbjct 725266 ATGTACTTGAGCGCCCAGTCGGCCTTCTTT 725295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138688256360