Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20montevideense_20[genbank_20GCA_5F001598995.1_202016- 03-01] 61 sequences; 24,872,216 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq6 167 3e-36 seq7 129 9e-25 seq8 102 1e-16 >seq6 Length=1458149 Score = 167 bits (184), Expect = 3e-36 Identities = 322/467 (69%), Gaps = 16/467 (3%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || || | ||| ||||| | || || ||||| |||||| Sbjct 934937 CAGGGTGGCAACAAGCGCCCTGGTGCCTTTGCCATCTACCTTGAGCCCTGGCATGCGGAC 934996 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 ||||| ||||| | || | ||||| ||| || || |||| || || | ||| Sbjct 934997 GTTTTCGACTTCCTTGACCTCCGCAAGAACCACGGAAAGGAGGAGGTTCGCGCGCGTGAC 935056 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAA---CGACGGTGGC 97052 |||| || || |||||||| || || | ||||||||||| ||| | |||||||| Sbjct 935057 CTGTTCTACGCTCTCTGGGTCCCTGACCTCTTCATGAAGCGTGTCGAGGCCGACGGTG-- 935114 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGA---TTGCTGGGGCGAA 97109 |||||| ||| |||||||||| | || || ||||| |||| | || | || Sbjct 935115 -ACTGGACCCTCATGTGCCCCGCCGAGTGCCCTGGTCTTGCCGACGTTCACTCG---GAG 935170 Query 97110 GAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGTCGA 97168 ||||||||| || |||| | ||||||| |||||| | || |||| | || | Sbjct 935171 GAGTTTGAGACCCTGTACCAGAAGTACGAGCGTGAGGGCAAGGGTCGCAAGACCA-TCAA 935229 Query 97169 TGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACA 97227 || | |||| || ||| |||||| | ||| ||| |||||||| || | || Sbjct 935230 GGC-CCAGAAGCTCTGGTTCGCCATCCTTGAGGCCCAGACCGAGACTGGTGGCCCCTTCA 935288 Query 97228 TTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGG 97287 | ||||||||||| | | || ||||| ||||| | ||| ||||||| |||||| Sbjct 935289 TCCTCTACAAGGACGCTGCCAACCGCAAGTCTAACCAGCAGCACCTGGGCACTATCAAGT 935348 Query 97288 GCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 ||||| || ||||| || || | |||||| | ||||| |||||| Sbjct 935349 CGTCCAACCTCTGCACTGAGATCATCGAGTACTCTTCTCCCGACGAG 935395 >seq7 Length=1425097 Score = 129 bits (142), Expect = 9e-25 Identities = 288/426 (68%), Gaps = 21/426 (5%) Strand=Plus/Plus Query 125433 GCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTC 125492 || ||||||||||| ||||| ||||| || || || ||||| | ||||| |||||| Sbjct 37373 GCGTTCGCCGCCGTCGAGGGTATCTTTTTCTCTGGCTCGTTTGCCTCGATCTTCTGGCTC 37432 Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAG 125552 |||||||| || ||||||||||| || || | |||||| | || || || |||||| Sbjct 37433 AAGAAGCGTGGCCTCATGCCCGGCCTCACTTTCTCCAACGAGCTCATCTCGCGTGACGAG 37492 Query 125553 GGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGA 125612 || || ||| ||||||||| ||| || || || | |||| || ||| Sbjct 37493 GGTCTCCACACCGACTTTGCCTGTCTGCTTTT---CACCCATCTCCG--CCG------TC 37541 Query 125613 TCCAGCGATGAAAAGGTCAT---CAACATTGTAACCGATGCCGTGAGGATAGAACAAGAG 125669 || || | || |||| || ||| | ||| ||||| | ||| ||||| ||| Sbjct 37542 GCCCGC-ACCCCAACCTCATTGAGAAGATTATCCGCGAGGCCGTCAAGATTGAACAGGAG 37600 Query 125670 TTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAG 125729 || || ||||| | || || || | || || |||||| | || |||||| | Sbjct 37601 TTCCTTACCGAGGCGCTCCCCGTGTCGCTCATCGGTATGAACGCCGGTCTCATGTGCCAA 37660 Query 125730 TACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTTAC 125786 ||||| ||||| || || || ||||| || || ||||| || |||||| ||| Sbjct 37661 TACATTGAGTTCGTCGCCGACCGTCTGCT---CGTCGCTCTTGGCAACGACAAGATCTAC 37717 Query 125787 AACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTT 125846 ||| | | ||||||||| || || ||| | || || || | || ||| ||||||| Sbjct 37718 AACTCGACGAATCCCTTCGACTTTATGGAGATGATCTCTCTGCAAGGCAAGGCCAACTTC 37777 Query 125847 TTCGAG 125852 |||||| Sbjct 37778 TTCGAG 37783 >seq8 Length=1386445 Score = 102 bits (112), Expect = 1e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 125424 AGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATC 125483 |||||| | || || || || |||||||||||||| ||||| ||||| |||||| Sbjct 725240 AGACTGATCGCCTTTGCGTGTGTGGAGGGCATCTTCTTCTCGGGATCATTTGCTGCCATC 725181 Query 125484 TTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCT 125543 || ||||||||||||||||| ||||||| || || || | || ||| |||| ||| Sbjct 725180 TTCTGGCTCAAGAAGCGCGGTCTCATGCGTGGCCTTACATTCTCGAATGAGCTTATCTCT 725121 Query 125544 CGAGACGAGGGCCTACACTGTGACTTTGC 125572 ||||| ||||| | ||| |||||||| Sbjct 725120 CGAGATGAGGGTATTCACACCGACTTTGC 725092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058634942360