Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20montevideense_20[genbank_20GCA_5F001598995.1_202016- 03-01] 61 sequences; 24,872,216 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq7 116 9e-21 >seq7 Length=1425097 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || || ||||| || |||||||| || || || | |||||| Sbjct 29744 AGGACAAGATGAAGGGTCGACTCCTTCTGGATGTTATAGTCCGAGAGGGTACGACCGTCC 29685 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || || ||||| || || | ||| || || || || || || || || ||| Sbjct 29684 TCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 29625 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| || || || || || | ||| || || || ||||| || || || ||| Sbjct 29624 TGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCAAGGGTGATGGTC 29565 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || || || |||||||| Sbjct 29564 TTGCCAGTGAGAGTCTTGACGAAAATCTGCAT 29533 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || || || | ||| || || ||||| || || ||||| || || || | ||||||| Sbjct 29972 AGAACGAGGTGAAGTGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGACCGTCT 29913 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || || ||||| || || | ||| || || || || || || || || ||| Sbjct 29912 TCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCC 29853 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| || || || || || | || ||| | || ||||| || || || ||| Sbjct 29852 TGAATCTTCGCCTTCACGTTGTCGATAGTGTCGGACGACTCGACCTCGAGGGTGATGGTC 29793 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || || || |||||||| Sbjct 29792 TTGCCAGTGAGAGTCTTGACGAAAATCTGCAT 29761 Score = 100 bits (110), Expect = 7e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || || ||||| || || ||||| || || || | |||||| Sbjct 29235 AGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGACCGTCC 29176 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || || ||||| || || | ||| || || || || || || || || ||| Sbjct 29175 TCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 29116 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| || || || || || | ||| || || || ||||| || || || ||| Sbjct 29115 TGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCAAGGGTGATGGTC 29056 Query 104528 TTACCAGTAAGTGTTTTTAC 104547 || || ||||| || || || Sbjct 29055 TTGCCCGTAAGGGTCTTGAC 29036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151397500110188