Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20montevideense_20[genbank_20GCA_5F001598995.1_202016- 03-01] 61 sequences; 24,872,216 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq6 439 6e-118 seq8 91.5 4e-13 >seq6 Length=1458149 Score = 439 bits (486), Expect = 6e-118 Identities = 1133/1720 (66%), Gaps = 16/1720 (1%) Strand=Plus/Plus Query 363448 GAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGAT 363507 || || |||||||| ||| | ||||||||| | || |||||||| | | | || Sbjct 934568 GAGCGTCCGCAGCACATGATTATGCGTGTTTCCATCGGTATCCACGGTGACAACATCGAC 934627 Query 363508 GCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTG-TA-TTCACGCACGCCACGCCAA 363565 | ||||| || || || || | || | | | || ||||| ||||| | || | Sbjct 934628 AAGGTCATTGAGACGTACAACCTCAT--GTCCGAGCGCTACTTCACTCACGCTTCCCCGA 934685 Query 363566 CAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGA 363625 | | | ||| ||||| |||| | || |||||||| || ||||| || | |||| Sbjct 934686 CCCTCTTCAACGCTGGTACTCCCCACCCTCAGATGTCGTCGTGCTTCCTCGTCGCTATGA 934745 Query 363626 AGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGA 363685 ||||||| || ||||| || |||| ||||| || |||| || || | || ||||||| Sbjct 934746 AGGACGACTCGATCGACGGCATCTACGACACCCTCAAGACCTGCGCCCAGATCTCCAAGA 934805 Query 363686 ATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCGCG 363745 ||| || || |||||| | || ||||| ||||||| || | ||||| || Sbjct 934806 CTGCTGGTGGCATTGGTCTCCACATTCACAACATTCGTGCCAAGGGCTCGTACATCGCCG 934865 Query 363746 GCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGA 363805 | || || ||||| || || | || |||||||| |||| | ||| || || Sbjct 934866 GAACCAACGGTTACTCCAACGGTATTGTCCCCATGCTCCGTGCCTACGACGCGACCGCCC 934925 Query 363806 GGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTC 363865 | ||||||||||||||||| |||||| || || ||||| || || || ||||| Sbjct 934926 GTTACGTCGACCAGGGTGGCAACAAGCGCCCTGGTGCCTTTGCCATCTACCTTGAGCCCT 934985 Query 363866 ATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGC 363925 ||||| || |||| || || ||||| ||||| || ||| ||||| ||||| | | Sbjct 934986 GGCATGCGGACGTTTTCGACTTCCTTGACCTCCGCAAGAACCACGGAAAGGAGGAGGTTC 935045 Query 363926 GTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGG 363985 | || ||||| |||||||| || || ||||| |||||| || |||||||| || |||| Sbjct 935046 GCGCGCGTGACCTGTTCTACGCTCTCTGGGTCCCTGACCTCTTCATGAAGCGTGTCGAGG 935105 Query 363986 CAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGG 364045 | | | ||| | ||| | ||||| ||| || || |||||| |||| || Sbjct 935106 CCGACGGTGACTGGACCCTCATGTGCCCCGCCGAGTGCCCTGGTCTTGCCGACGTTCACT 935165 Query 364046 GTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAA 364105 || || | || | || ||| | ||||| || ||||| |||| ||| ||||| | Sbjct 935166 CGGAGGAGTTTGAGACCCTGTACCAGAAGTACGAGCGTGAGGGCAAGGGTCGCAAGACCA 935225 Query 364106 TTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCT 364165 | || |||||||| ||||| |||||| | || | |||| ||||| || |||| Sbjct 935226 TCAAGGCCCAGAAGCTCTGGTTCGCCATCCTTGAGGCCCAGACCGAGACTGGTGGCCCCT 935285 Query 364166 ATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTC 364225 || | ||||| || | |||||||||||| |||||||||||||| || || || Sbjct 935286 TCATCCTCTACAAGGACGCTGCCAACCGCAAGTCTAACCAGCAGCACCTGGGCACTATCA 935345 Query 364226 AGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTAT 364285 || | |||||| || || ||||| || || ||| | ||||||||||| |||||| | Sbjct 935346 AGTCGTCCAACCTCTGCACTGAGATCATCGAGTACTCTTCTCCCGACGAGGTTGCCGTCT 935405 Query 364286 GTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT--------AAAAGATGGTACTTTTGA 364337 | |||||||| || || || ||||| ||||| || |||| | | || | ||| Sbjct 935406 GCAACCTTGCCTCCATTGCCCTTCCCGCGTTCGTCGACTTTGAAAACA--GCACCTATGA 935463 Query 364338 CCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCGA 364397 | | || | ||| | || | ||| | | ||| || || ||| || ||| Sbjct 935464 CTTCAAGAAGCTTCACGAGATCACCAAGGTCGTTACCAAGAACCTTGACTGCGTCATCTC 935523 Query 364398 CAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGG 364457 || || || || ||| || ||| | || || ||||| |||||||| | || Sbjct 935524 GCGCAACTACTACCCCGTTCAGGAGGCCAAAAACTCGAACATGCGCCATCGCCCCGTCGG 935583 Query 364458 TCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATTCGCC 364517 ||| ||||| ||||| || || |||| || ||| ||| ||| | || || ||||| Sbjct 935584 TCTCGGTGTCCAGGGTCTTGCCGACGCCTTCATGGCCCTCCGCATGCCCTTCGACTCGCC 935643 Query 364518 TGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACTGC 364577 | |||||| || || ||||||| || || || || || || | || Sbjct 935644 CGCCGCTCGCCAGCTCAACCTCCAGATCTTCGAGACCATCTACCACGCTGCTCTCGAGGC 935703 Query 364578 TTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTC 364637 |||||||| |||| | |||| ||| || | || ||||| || || | || Sbjct 935704 GTCGTGTGAGATGGCCCAGGAGGTTGGAACCTACCCTTCATACGAGGGTTCGCCCATCTC 935763 Query 364638 GCAGGGAAAATTCCAGTTTGATCTAT-GGAATGTCACGCCATCTGTCCGATGGAACTGGG 364696 |||||| || | |||||||| || | || || | ||| | | || |||||||||| Sbjct 935764 GCAGGGCAAGCTTCAGTTTGACCTTTGGGGCCGTATCCCCA-CCGACCTCTGGAACTGGG 935822 Query 364697 ATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCA 364756 | ||| ||| || | ||| | ||| ||||||||| || | || || | Sbjct 935823 ACGAGCTCCGTGAGAAGATCGCCAAGAACGGTGTTCGCAACTCGCTTCTCGTCGCACCTA 935882 Query 364757 TGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAA 364816 |||| || ||||| || | ||||| || || |||||||||||||| || | || Sbjct 935883 TGCCTACTGCTTCCACCTCTCAGATTCTTGGCTGGAACGAGTGCTTCGAGCCCTACACCT 935942 Query 364817 GCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAG 364876 | || || || ||||| || ||||| || || || | ||| || | || Sbjct 935943 CGATGCTCTACTCCCGCCGTGTGCTTTCGGGTGACTTCCAGGTCGTCTGCCCCTGGCTCC 936002 Query 364877 TCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCG 364936 || || || | ||| || || |||| ||||| ||||||| | |||||||| Sbjct 936003 TCCGTGACCTCATCAACCTCGACCTCTGGGATGACAACATGAAGCAGCTCGTCATCGCCT 936062 Query 364937 CTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAA 364996 || |||||| | ||| ||||||| ||| |||| || || | ||| | || ||||| | Sbjct 936063 CTGGTGGTTCGATCCAGCACATTCCTGGAATTCCCGATGAGATCAAGTCGATCTACAAGA 936122 Query 364997 CCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTA 365056 | || ||||| ||||| | | | | || || | || || || || ||||| |||| Sbjct 936123 CTGTCTGGGAGATTTCGCAGAAAGCAGTTATCGACCTTGCCGCTGACCGTGGTGCCTTTA 936182 Query 365057 TCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACAT 365116 || ||| |||||| | ||| | | || | | || | | | | ||||||| | Sbjct 936183 TCGACCAGTCGCAGTCGCTCAACATCCACCTGTCGAACCCTTCGTTCTCGCAGCTTACTT 936242 Query 365117 CCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 ||||||| |||||||| ||||| ||||||||||| || Sbjct 936243 CCATGCACTTCTACGGCTGGAAGCGTGGTCTTAAGACCGG 936282 >seq8 Length=1386445 Score = 91.5 bits (100), Expect = 4e-13 Identities = 122/167 (73%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 22495 CTTATTGCATTTGCTGTG-GTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTT 22553 || || || ||||| ||| || || ||||| ||||| || ||| ||||| ||| ||||| Sbjct 725237 CTGATCGCCTTTGC-GTGTGTGGAGGGCATCTTCTTCTCGGGATCATTTGCTGCCATCTT 725179 Query 22554 TTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCG 22613 ||||| || || || | | |||| || || || || || |||||| | || || Sbjct 725178 CTGGCTCAAGAAGCGCGGTCTCATGCGTGGCCTTACATTCTCGAATGAGCTTATCTCTCG 725119 Query 22614 AGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATC 22660 |||||||||| |||| ||||| |||||||| | || ||| || ||| Sbjct 725118 AGATGAGGGTATTCACACCGACTTTGCGTGCCTCCTCTATGGGCATC 725072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303352581347702