Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20montevideense_20[genbank_20GCA_5F001598995.1_202016- 03-01] 61 sequences; 24,872,216 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq7 122 8e-23 seq10 100 3e-16 seq1 91.5 1e-13 >seq7 Length=1425097 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||| | |||||||||||| || ||||| || || Sbjct 29759 CCACCACGGAGACGGAGGACAAGATGAAGGGTCGACTCCTTCTGGATGTTATAGTCCGAG 29700 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| ||||||||||| || |||| | |||||||||||| || ||| Sbjct 29699 AGGGTACGACCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGCGGG 29640 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||||| | || | || || | ||||||| Sbjct 29639 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACC 29580 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || ||||| || |||||||||||||| Sbjct 29579 TCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAAATCTGCAT 29533 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | ||| || || | || | ||||||||||| ||||||||||| ||| Sbjct 30216 GCCTCCACGAAGACGAAGGACAAGGTGCAACGTCGACTCCTTCTGAATGTTGTAGTCGGA 30157 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || || Sbjct 30156 AAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCGGGGGG 30097 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| ||| ||| ||| | | || | ||| |||| ||||| | Sbjct 30096 AATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATAGTGTCGGACGACTCAAC 30037 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || || || || || || |||||||||||||| Sbjct 30036 TTCAAGAGTGATAGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCAT 29989 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || || || | || | || |||||||| || |||||||| || Sbjct 29987 CCACCACGCAGGCGGAGAACGAGGTGAAGTGTGGACTCCTTCTGGATGTTGTAGTCCGAG 29928 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||| || ||||||||||| || |||| | |||||||||||| || || Sbjct 29927 AGGGTACGACCGTCTTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGA 29868 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || ||| ||| | | || | ||| |||| ||||||| Sbjct 29867 ATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCGATAGTGTCGGACGACTCGACC 29808 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || || || ||||| || |||||||||||||| Sbjct 29807 TCGAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAAATCTGCAT 29761 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||| || || | ||| | ||||||||||||||| |||||||| || Sbjct 29531 CCACCGCGGAGACGGAGGACAAGATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCCGAA 29472 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| ||||||||||| || |||| | |||||||||||| || ||| Sbjct 29471 AGGGTACGACCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGCGGG 29412 Query 131128 ATTCCTTCTTTGTC 131141 || || || ||||| Sbjct 29411 ATGCCCTCCTTGTC 29398 Score = 105 bits (116), Expect = 6e-18 Identities = 282/416 (68%), Gaps = 15/416 (4%) Strand=Plus/Plus Query 46177 GTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTTTACATCAAAACCAAGGGC 46236 || ||||| ||||||| |||||| |||||| | ||||| | |||| | ||| Sbjct 37385 GTCGAGGGTATCTTTTTCTCTGGCTCGTTTGCCTCGATCTTCTGGCTCAAGAAGCGTGGC 37444 Query 46237 ATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGCGACGAGGGCCTGCATACG 46296 ||||||||||||| || || ||||||||| || ||||| |||||||| || || || Sbjct 37445 CTCATGCCCGGCCTCACTTTCTCCAACGAGCTCATCTCGCGTGACGAGGGTCTCCACACC 37504 Query 46297 GACTTTGCGTGTCT-CTACTATAACAC-TCGCGTGCACGACAAGCTTGCGCCCGACACCG 46354 |||||||| ||||| || | | || | || | || || | || || ||| | ||| Sbjct 37505 GACTTTGCCTGTCTGCT--TTTCACCCATCTC-CGC-CGTC--GCCCGCACCCCA-ACCT 37557 Query 46355 TGCTGAG--CATGTTCAAGGAGGCGGTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACT 46412 |||| || || ||||| || ||||| ||||||| |||| | || || Sbjct 37558 CATTGAGAAGATTATCCGCGAGGCCGTCAAGATTGAACAGGAGTTCCTTACCGAGGCGCT 37617 Query 46413 GCCCGCTGCCCTGCTGGGCATGAACGCACAGTC-AATGTGCGACTACATCGAGTTTGTAG 46471 |||| | || | || |||||||| | ||| |||||| | ||||| ||||| || | Sbjct 37618 CCCCGTGTCGCTCATCGGTATGAACGC-CGGTCTCATGTGCCAATACATTGAGTTCGTCG 37676 Query 46472 CGGACCGACTGCTCGTGCAGCTTCACCAGCCGAAGCATTTTC-ACGCGCGCAATCCATTT 46530 | ||||| |||||||| ||| | | ||| || | | || || ||||| || Sbjct 37677 CCGACCGTCTGCTCGTCGCTCTTGGCAACGACAAG-ATCTACAACTCGACGAATCCCTTC 37735 Query 46531 GAGTTTATGAACAACATCTCCCTGGAGGGCAAAACTAATTTTTTCGAAAAGCGCGT 46586 || |||||| | | ||||| ||| | ||||| | || || ||||| |||||| Sbjct 37736 GACTTTATGGAGATGATCTCTCTGCAAGGCAAGGCCAACTTCTTCGAGTCGCGCGT 37791 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||| || || | ||| | |||||||||||| || |||||||| || Sbjct 29250 CCACCGCGGAGACGGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 29191 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| ||||||||||| || |||| | |||||||||||| || ||| Sbjct 29190 AGGGTACGACCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGCGGG 29131 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||||| | || | || || | ||||||| Sbjct 29130 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACC 29071 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTAC 131222 || | ||| | ||| || || || || || || || Sbjct 29070 TCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGAC 29036 >seq10 Length=927812 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | || | |||||||||||| || |||||||| || Sbjct 77127 CCACCACGGAGGCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 77068 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| ||||||||||| ||| |||| | ||||||||||| || ||| Sbjct 77067 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 77008 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 77007 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACTCCACC 76948 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTAC 131222 |||| ||| | || || || || || || || || Sbjct 76947 TCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGAC 76913 >seq1 Length=3521688 Score = 91.5 bits (100), Expect = 1e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 131070 GGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGAT 131129 |||||| |||||| ||||||||||| ||| |||| | |||||||||||| || ||||| Sbjct 2364819 GGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGAT 2364878 Query 131130 TCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTC 131189 || || ||||| ||| ||| ||||| | || | || || | ||||||| || Sbjct 2364879 GCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATCGTGTCCGACGACTCGACCTC 2364938 Query 131190 GACGGTAACGGTTTTACCGGTTAGAGTTTTTAC 131222 || ||| | ||| || ||||| || || || || Sbjct 2364939 GAGGGTGATGGTCTTGCCGGTGAGGGTCTTAAC 2364971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012440090240