Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20montevideense_20[genbank_20GCA_5F001598995.1_202016- 03-01] 61 sequences; 24,872,216 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq7 123 3e-23 seq6 113 6e-20 seq8 82.4 1e-10 >seq7 Length=1425097 Score = 123 bits (136), Expect = 3e-23 Identities = 180/252 (71%), Gaps = 3/252 (1%) Strand=Plus/Minus Query 32657 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 32716 || ||| || || ||| ||| ||||||||||| | || | |||||||| || || Sbjct 37519 CAGACAGGCAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAAGT 37460 Query 32717 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAA 32776 ||| |||||||| ||||||||||| || ||||| || || || ||||| || ||||| || Sbjct 37459 GAGGCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATCGAGGCAAACGAGCCAGAGAA 37400 Query 32777 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA--ACCGGCGCT-GTC 32833 || || || || || || || || ||||| || | ||| || | || ||||| ||| Sbjct 37399 AAAGATACCCTCGACGGCGGCGAACGCAATGAGGCGCTCAGCAAAGGACGAGCGCTCGTC 37340 Query 32834 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 32893 ||||| | ||||| ||||||||||| || | || || || ||||| || || Sbjct 37339 GGAAATCCAACGGAGGGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGC 37280 Query 32894 ATTAAAGAGATA 32905 || ||||| || Sbjct 37279 CTTGAAGAGGTA 37268 >seq6 Length=1458149 Score = 113 bits (124), Expect = 6e-20 Identities = 432/676 (64%), Gaps = 2/676 (0%) Strand=Plus/Minus Query 63020 AGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 63079 || ||||| || || | || ||||| | | ||| || ||||| ||| || || ||| Sbjct 935151 AGACCAGGGCACTCGGCGGGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTTC 935092 Query 63080 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTT 63139 || ||||| ||||| | ||| ||||| || || || | | | | ||||| ||| Sbjct 935091 ATGAAGAGGTCAGGGACCCAGAGAGCGTAGAACAGGTCACGCGCGCGAACCTCCTCCTTT 935032 Query 63140 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 63199 || ||||| || || ||||| | | || || | |||||| || || | ||| Sbjct 935031 CCGTGGTTCTTGCGGAGGTCAAGGAAGTCGAAAACGTCCGCATGCCAGGGCTCAAGGTAG 934972 Query 63200 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 63259 ||||| | | ||||| || ||||| || ||||| || | ||| | ||||| | Sbjct 934971 ATGGCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCGACGTAACGGGCGGTCGCGTCG 934912 Query 63260 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTT 63319 || | | | ||| || | |||||| ||||| ||| ||||| || | ||| || Sbjct 934911 TAGGCACGGAGCATGGGGACAATACCGTTGGAGTAACCGTTGGTTCCGGCGATGTACGAG 934852 Query 63320 CCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 63379 || |||||||||| || ||| ||||| || || || || | || ||||| Sbjct 934851 CCCTTGGCACGAATGTTGTGAATGTGGAGACCAATGCCACCAGCAGTCTTGGAGATCTGG 934792 Query 63380 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 63439 ||||| || | || || |||||||| || || || ||| |||| | || Sbjct 934791 GCGCAGGTCTTGAGGGTGTCGTAGATGCCGTCGATCGAGTCGTCCTTCATAGCGACGAGG 934732 Query 63440 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGA 63499 || || ||||| || | | ||| || || || || | ||| || ||||||||| Sbjct 934731 AAGCACGACGACATCTGAGGGTGGGGAGTACCAGCGTTGAAGAGGGTCGGGGAAGCGTGA 934672 Query 63500 GTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTAT-ATCCCATTG 63558 || || | || || | || |||||||||||||| | ||| || | || | Sbjct 934671 GTGAAGTAGCGCTCGGACATGAGGTTGTACGTCTCAATGACCTTGTCGATGTTGTCACCG 934612 Query 63559 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT 63618 || || || | | |||||||| | ||||||||| || | || | | |||| || Sbjct 934611 -TGGATACCGATGGAAACACGCATAATCATGTGCTGCGGACGCTCGGCCACCTTGCCGTC 934553 Query 63619 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 63678 || ||| | || || || | || || ||||| || |||||||| | ||||| Sbjct 934552 AATGCGCAAGAGATATGAGCGCTCGAGGGTCTTGAAACCGAAGTAGTTGTAGGCGAAGTC 934493 Query 63679 TCGTTCGTAAATAATA 63694 || ||||| || ||| Sbjct 934492 ACGGTCGTAGATTATA 934477 >seq8 Length=1386445 Score = 82.4 bits (90), Expect = 1e-10 Identities = 148/210 (70%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || || || ||| ||| | |||||| |||| | || | || || || || || || Sbjct 725089 CACGCAAAGTCGGTGTGAATACCCTCATCTCGAGAGATAAGCTCATTCGAGAATGTAAGG 725148 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780 || |||| || || ||||| || ||||| || |||| ||||||||||| || ||||| Sbjct 725149 CCACGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGCAGCAAATGATCCCGAGAAGAAG 725208 Query 32781 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT--GT- 32837 || || || || ||||||||| || ||||| | | || |||| |||| | || Sbjct 725209 ATGCCCTCCACACACGCAAAGGCGATCAGTCT-AGTGCGGAA-CGGC-ATGTCGTTCGTG 725265 Query 32838 ATCCACTTTTGAGCCCAATCGGCCTTCTTT 32867 || |||| | ||||| |||||||||||| Sbjct 725266 ATGTACTTGAGCGCCCAGTCGGCCTTCTTT 725295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631516855600