Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20montevideense_20[genbank_20GCA_5F001598995.1_202016- 03-01] 61 sequences; 24,872,216 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq7 113 4e-20 seq10 89.7 4e-13 >seq7 Length=1425097 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | || || || || ||||||||||||| || | || Sbjct 29989 ATGCAGATTTTCGTCAAGACCCTCACTGGCAAGACTATCACTCTTGAAGTTGAGTCGTCC 30048 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || | || || || || ||||||||||| ||||| ||||| || Sbjct 30049 GACACTATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 30108 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||| ||| | ||||| |||||| | ||||| |||||| Sbjct 30109 CAGCGTCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCCGACTACAAC 30168 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || || || || Sbjct 30169 ATTCAGAAGGAGTCGAC 30185 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || ||| |||||||||| || || | | || ||| | ||| | |||| Sbjct 29329 ACCGGCAAGACGATCACTCTTGAGGTTGAGTCTTCGGACACCATCGACAACGTCAAGGCC 29388 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| || || ||||| || || ||||| || ||||||||||| Sbjct 29389 AAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAGCAGCGTCTCATCTTTGCCGGCAAG 29448 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | ||||| || ||| | || || |||||||| ||||| || || ||| | ||| Sbjct 29449 CAGCTCGAGGACGGTCGTACCCTTTCGGACTACAACATCCAAAAGGAGTCGACCCTTCAT 29508 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 | || | || | ||||| ||| Sbjct 29509 CTTGTCCTCCGTCTCCGCGGTGGT 29532 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || ||| | || || || || |||| ||||| || || | | Sbjct 29533 ATGCAGATTTTCGTCAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTCGAGTCTTCG 29592 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || ||||| ||||||||||| || || ||||| || Sbjct 29593 GACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCAG 29652 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||||||||| ||| | ||||| || ||| |||| || || ||| Sbjct 29653 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGTCGTACCCTCTCGGACTATAAC 29712 Query 22399 ATTCAAAAAGAATCCACCATACAT 22422 || || || || || ||| | ||| Sbjct 29713 ATCCAGAAGGAGTCGACCCTTCAT 29736 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || ||| | || || || || |||| || || || || | || Sbjct 29761 ATGCAGATTTTCGTCAAGACTCTCACTGGCAAGACCATCACCCTCGAGGTCGAGTCGTCC 29820 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || ||||| ||||||||||| ||||| ||||| || Sbjct 29821 GACACTATCGACAACGTGAAGGCGAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAG 29880 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||||||||| ||| | || || || ||| |||| || |||||| Sbjct 29881 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAAGACGGTCGTACCCTCTCGGACTACAAC 29940 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || ||||| | || | ||| | || |||| || ||| Sbjct 29941 ATCCAGAAGGAGTCCACACTTCACCTCGTTCTCCGCCTGCGTGGTGGT 29988 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| ||||| || || | | || ||| | ||| | |||| Sbjct 29048 ACGGGCAAGACCATCACCCTTGAGGTCGAGTCTTCGGACACCATCGACAACGTCAAGGCC 29107 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| ||||||||||| || || ||||| || || ||||| || ||||||||||| Sbjct 29108 AAGATTCAGGACAAGGAGGGCATCCCGCCCGACCAGCAGCGTCTCATCTTTGCCGGCAAG 29167 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | ||||| || ||| |||| || |||||||| || || || || ||| | ||| Sbjct 29168 CAGCTCGAGGACGGTCGTACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTTCAT 29227 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 | ||| | || | ||||| ||| Sbjct 29228 CTCGTTCTCCGTCTCCGCGGTGGT 29251 >seq10 Length=927812 Score = 89.7 bits (98), Expect = 4e-13 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| || || ||||| | |||| ||| | ||| | |||| Sbjct 76925 ACGGGCAAGACTATCACCCTCGAGGTGGAGTCGTCCGACACCATCGACAACGTCAAGGCC 76984 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| || || ||||| || || || || || || |||||||| Sbjct 76985 AAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTCATCTTCGCCGGCAAG 77044 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 ||| | ||||| ||||||| | || || |||||||| || || || || ||| Sbjct 77045 CAGCTCGAGGACGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAGTCGACC 77098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727687958465