Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20montevideense_20[genbank_20GCA_5F001598995.1_202016- 03-01] 61 sequences; 24,872,216 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq13 147 4e-30 seq7 114 3e-20 seq10 113 9e-20 seq1 105 1e-17 >seq13 Length=761807 Score = 147 bits (162), Expect = 4e-30 Identities = 376/569 (66%), Gaps = 10/569 (2%) Strand=Plus/Minus Query 218505 CATCCCCGTCCCTGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGA 218564 ||| ||| || |||||| | ||||||| ||||| || ||||| | || Sbjct 184993 CATTCCCATCGACGACTTCGTGAACAAGGAACTCATCCTCTTCTCCATGGCCGACAACAT 184934 Query 218565 GCGTTCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGC 218624 |||||||| || || | ||||||||||||||| || || ||| |||||| || Sbjct 184933 TCGTTCTATACCATCGGTTGCGGATGGCCTCAAGCCTGGTCAACGCAAGGTCCTCTATGG 184874 Query 218625 CGCATTCAAGCGGAACCTGGTTCAA----GAAATTAAGGTCGCTCAGTTTTCTGGTTATG 218680 ||| ||||| ||| | ||| || | ||||| |||||| | ||| |||| Sbjct 184873 CGCCTTCAAAAAGAA----GATCACCTCTGATCTGAAGGTTGCTCAGCTGAGTGGCTATG 184818 Query 218681 TATCCGAAATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCA 218740 | || || | | || || ||||| || |||||||| |||| | || || || Sbjct 184817 TTTCTGAGCAGACAGCATATCACCACGGCGAACAGAGTCTCCAGGCCACTATCGTGGGTC 184758 Query 218741 TGGCACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTG 218800 | || || ||| |||||||||||||||||| || | || |||||||||||||||| Sbjct 184757 TCGCGCAAAACTTTGTGGGCAGTAACAACATCAATCTCCTCGAGCCCAACGGTCAGTTTG 184698 Query 218801 GTTCTCGTCTAT-TGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTG 218859 || |||| | || ||| || |||||| || || | || || || ||||| | Sbjct 184697 GTACTCG-CAATCAGGGAGGTAAGGATGCAGCGAGCGCTCGTTACATTTTCACAAATATT 184639 Query 218860 TCGCCCGTGACGCGCCAGGTGTTCAATCAGGCCGATGATGTGCTCCTTAAGTATCTTGAG 218919 | | | |||| |||| | ||| | ||| ||| ||| | |||| || ||||||| Sbjct 184638 CCCCGCATGACTCGCCTTCTCTTCCACAAGGACGACGATCCGATCCTCAACTATCTTGTT 184579 Query 218920 GACGATGGTTCTTCGATTGAGCCCGAGTGGTATGTGCCTGCTATTCCGTTTTTGCTCGTA 218979 || |||||| ||| |||||||||| || | ||| | | || || | ||||| Sbjct 184578 GAAGATGGTGAACAGATCGAGCCCGAGTACTACCTCCCTACAGTACCCTTGGTTCTCGTC 184519 Query 218980 AATGGTGCCAATGGTATCGGGACAGGGTTCAGTACTGACATTCCTTCTTACAATCCCAAG 219039 || || ||| ||||||| || ||||| | || || ||||| ||||| || | Sbjct 184518 AACGGCGCCGATGGTATTGGTACAGGCTGGAGCACCTCAATTCCGAGCTACAACCCTGAA 184459 Query 219040 GACATCATTGACAACGTCAAGCGTCTCAT 219068 ||||| | ||||| || |||||||| Sbjct 184458 GACATTGTCGACAATATCCGTCGTCTCAT 184430 >seq7 Length=1425097 Score = 114 bits (126), Expect = 3e-20 Identities = 291/440 (66%), Gaps = 16/440 (4%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | ||||||||| | |||||| ||||||||||| || || Sbjct 37782 TCGAAGAAGTTGGCCTTGCCTTGCAGAGAGATCATCTCCATAAAGTCGAAGGGATTCGTC 37723 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| |||| | |||||| || |||| | ||||| || || ||||| | Sbjct 37722 GAGTTGTAGATCTTGTCGTTGCCAAGAGCGACGAGCAGACGGTCGGCGACGAACTCAATG 37663 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGA-ATTGCCTCACAGAT 251741 || || | ||| || | | |||||| || || | ||||| || | ||||| | Sbjct 37662 TATTGGCACATGAGACCGGCGTTCATACCGATGAG-CGACACGGGGAGCGCCTCGGTAAG 37604 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCT----GTGCCA 251794 ||| |||| ||| | || ||||| | ||| || | | | |||| Sbjct 37603 GAACTCCTGTTCAATCTTGACGGCCTCGCGGATAATCTTCTCAATGAGGTTGGGGTGCGG 37544 Query 251795 GAGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCT 251854 | ||| || || | | | | || || | |||| | ||| ||||||| Sbjct 37543 GCGACGGCGG-------AGATGGGTGAAAAGCAGACAGGCAAAGTCGGTGTGGAGACCCT 37491 Query 251855 CGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGA 251914 |||| || ||||| ||||||||| | | ||||| ||||| | ||||| ||| ||| Sbjct 37490 CGTCACGCGAGATGAGCTCGTTGGAGAAAGTGAGGCCGGGCATGAGGCCACGCTTCTTGA 37431 Query 251915 GCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAA 251974 |||||||||| | | ||| || |||||||| | | ||||||||| | | |||| Sbjct 37430 GCCAGAAGATCGAGGCAAACGAGCCAGAGAAAAAGATACCCTCGACGGCGGCGAACGCAA 37371 Query 251975 CAAGGCGCTCAGCAAACGAC 251994 |||||||||||||| ||| Sbjct 37370 TGAGGCGCTCAGCAAAGGAC 37351 >seq10 Length=927812 Score = 113 bits (124), Expect = 9e-20 Identities = 139/188 (74%), Gaps = 3/188 (2%) Strand=Plus/Minus Query 280173 GTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACC 280232 ||| |||| ||||| ||| | || |||||||| || | || |||| || |||||||| Sbjct 907952 GTCCTTGGTCCCAACGGTTCCGGAAAGTCTACGCTCGTGAAGCTCCTTACCGGCGAGACT 907893 Query 280233 CAGGCCACTGAGGG--GT-CCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289 || ||| |||| || |||| |||||||| || ||| | || | |||||| ||| Sbjct 907892 GAGCCCAACAAGGGCGGTACCGTCTGGAAGCACCCTAACCTCGTCATTGGTTACGTTGCT 907833 Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAG 280349 ||||||||||||||||||||||| | ||||| ||| |||||| | | ||||| | Sbjct 907832 CAGCACGCTTTCCACCACATCGACCAGCACCTTGACTCTACTCCTCTCGAGTACATGCTC 907773 Query 280350 TGGCGCTA 280357 ||||| || Sbjct 907772 TGGCGTTA 907765 Score = 100 bits (110), Expect = 6e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 ||||| || || |||||||||||||||||||| || ||| | || ||||| || | ||| Sbjct 908429 GGTTCGCTCTCCGGTGGTTGGAAGATGAAGCTCGCTCTCGCGCGTGCCATCCTTTTCCGT 908370 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 ||||| | || || ||||| ||||| |||||||| | ||| | |||||| | ||| Sbjct 908369 GCCGACATTCTTCTTCTTGACGAGCCCACCAACCATCTCGACGTCGTCAACGTCACTTGG 908310 Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878 || | |||||| ||| || |||| | || |||| || || |||||||| Sbjct 908309 CTTATCGACTACCTCACCTCGCTCAAGACCTGCACGTCGATCATGGTTTCGCACGACTCG 908250 Query 279879 GGCTTCCT 279886 | |||||| Sbjct 908249 GACTTCCT 908242 >seq1 Length=3521688 Score = 105 bits (116), Expect = 1e-17 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 280170 GGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAG 280229 ||||| | || ||||| ||||| |||||||| ||||| ||||| |||| || |||||| Sbjct 3353983 GGTGTTGTCGGCCCCAACGGTGCCGGTAAGTCGACCCTCATCAAGCTCCTCACCGGCGAG 3354042 Query 280230 ACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289 || || ||||| |||| ||||| ||| | || | | ||||||||| Sbjct 3354043 ACGGTTCCCCAGGAGGGTACCGTGCACAAGCACCCCGCGCTCCGTGTCGGTTACGTCGCC 3354102 Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAG 280349 |||||||| |||||||||||| | | ||||| |||| |||| | || ||||| ||| Sbjct 3354103 CAGCACGCGTTCCACCACATCAACCAGCACCTCGACAAGACTGCCGTTCAGTACATCCAG 3354162 Query 280350 TGGCGCTA 280357 ||||| || Sbjct 3354163 TGGCGTTA 3354170 Score = 102 bits (112), Expect = 2e-16 Identities = 177/257 (69%), Gaps = 3/257 (1%) Strand=Plus/Plus Query 279702 TCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCC 279761 || || || |||||||||||||||||||| | || |||| ||||| || | ||||| Sbjct 3353515 TCGCTCTCTGGTGGTTGGAAGATGAAGCTCGAGCTTGCTCGTGCCATGCTTATCGGTGCC 3353574 Query 279762 GATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTA 279821 || | || || || |||||||| ||||||||| ||||| | | || |||||||| Sbjct 3353575 GACATTCTCCTCCTCGATGAGCCTACCAACCACTTGGACGTCCAGACTGTTGCCTGGCTT 3353634 Query 279822 GTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGC 279881 | | |||||| | || || | | | | | | || ||||| |||||||||||| Sbjct 3353635 GAGGACTACCTCAACAACCTTCCCCAGATGACCTGCATGATCGTCTCGCACGACTCTGGC 3353694 Query 279882 TTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTCTCCAAG 279941 ||||| || || || | | ||| || || || ||||| || |||||| | | Sbjct 3353695 TTCCTCGACAATGTCTGTACCGACATTATCCATTACGAGCAGAA---GAAGCTTGTCTAC 3353751 Query 279942 CACATCGGCAACCTGTC 279958 ||| |||||||| || Sbjct 3353752 TACAAGGGCAACCTTTC 3353768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027835996681301