Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20montevideense_20[genbank_20GCA_5F001598995.1_202016- 03-01] 61 sequences; 24,872,216 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq7 109 5e-19 >seq7 Length=1425097 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| | || | || || || || || |||||||| || Sbjct 29990 ATACCACCACGCAGGCGGAGAACGAGGTGAAGTGTGGACTCCTTCTGGATGTTGTAGTCC 29931 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| |||||||| || || || || ||||||||||||| ||||| || Sbjct 29930 GAGAGGGTACGACCGTCTTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGG 29871 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| |||||| || | | || | ||||||| || ||| Sbjct 29870 GGAATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCGATAGTGTCGGACGACTCG 29811 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| || ||||| || || ||||||||||| Sbjct 29810 ACCTCGAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAAATCTGCAT 29761 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | ||| | || || || || || ||||| || || Sbjct 29762 ATACCACCACGGAGACGGAGGACAAGATGAAGGGTCGACTCCTTCTGGATGTTATAGTCC 29703 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| || || || || || || || ||||||||||||| ||||| || Sbjct 29702 GAGAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGC 29643 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| || ||||| |||||| || | | || | |||||| | || ||| Sbjct 29642 GGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCG 29583 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| || ||||| || || ||||||||||| Sbjct 29582 ACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAAATCTGCAT 29533 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114185 CGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 ||| || || || ||||||||||| ||| | ||| || || || || || || || Sbjct 30186 CGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCC 30127 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 ||| ||||||||||||| ||||| || |||||||| || ||||| ||||| || Sbjct 30126 CGCGAAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTT 30067 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | || | ||||||| || || || || | || | || ||||| || || || Sbjct 30066 CACATTGTCGATAGTGTCGGACGACTCAACTTCAAGAGTGATAGTCTTGCCAGTGAGGGT 30007 Query 114365 TTTTACAAAAATCTGCAT 114382 || || ||||||||||| Sbjct 30006 CTTGACGAAAATCTGCAT 29989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420134087656332