Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20montevideense_20[genbank_20GCA_5F001598995.1_202016- 03-01] 61 sequences; 24,872,216 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq6 434 2e-116 seq7 251 1e-61 seq8 123 5e-23 >seq6 Length=1458149 Score = 434 bits (480), Expect = 2e-116 Identities = 1248/1894 (66%), Gaps = 73/1894 (4%) Strand=Plus/Minus Query 243737 ACGCTGAACTGGACGG-GTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTT 243795 ||| ||||||| | || || | || ||| | ||| | |||||||||||||||||||| Sbjct 936333 ACGGTGAACTGAATGGCGTTGGCCGACGGGCG-GGTACGGAGGTAGTACATGCCGGTCTT 936275 Query 243796 GAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGG 243855 || |||| |||| ||| || |||||||| || |||| | | | || || Sbjct 936274 AAGACCACGCTTCCAGCCGTAGAAGTGCATGGAAGTAAGCTGCGAGAAC--GAA----GG 936221 Query 243856 GTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTC 243915 || ||| |||| || |||||| ||||| |||||||| |||| | || || Sbjct 936220 GT-----TCG-ACAGGTGGATGTTGAGCGACTGCGACTGGTCGATAAAGGCACCACGGTC 936167 Query 243916 TGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTT 243975 ||||| | | ||| | | ||||| || ||||| | | ||||||||||| | ||| Sbjct 936166 AGCGGCAAGGTCGATAACTGCTTTCTGCGAAATCTCCCAGACAGTCTTGTAGATCGACTT 936107 Query 243976 GAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCC-CTTGTGGACGATGAGCTGGG 244034 || | ||||| | || |||| ||| | ||| || | | || |||||| | | Sbjct 936106 GATCTCATCGGGAATTCCAGGAATGTGCTGGATCGAACCACCAGAGG-CGATGA-CGAGC 936049 Query 244035 TGCG-CATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCTGTTC 244093 ||| |||||| || | ||| ||| | | | || | | || ||| ||| | Sbjct 936048 TGCTTCATGTTGTCATCCCAGAGGTCGAGGTTGATGAG-GTCACGG--AGGAGCCAGGGG 935992 Query 244094 ---ACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGC 244150 || ||||| || || ||||| ||||| ||||| |||||| | | || ||| Sbjct 935991 CAGACGACCTGGAAGTCACCCGAAAGCACACGGCGGGAGTAGAGCATCGAGGTGTAGGGC 935932 Query 244151 TCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACC 244210 |||| || ||| | ||| || ||||| | ||| ||||| ||||| || | || Sbjct 935931 TCGAAGCACTCGTTCCAGCCAAGAATCTGAGAGGTGGAAGCAGTAGGCATAGGTGCGACG 935872 Query 244211 AGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCAC 244270 || || ||| | || |||| | | ||| | |||||||| ||||| ||| Sbjct 935871 AGAAGCGAGTTGCGAACACCGTTCTTGGCGATCTTCTCACGGAGCTCGTCCCAGTTCCA- 935813 Query 244271 ATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTG 244330 |||||| | | | ||||||| | ||||||||| ||| |||| | Sbjct 935812 --------GAGGTCGGTGGGGATACGGCCCCAAAGGTCAAACTGAAGCTTGCCCTGCGAG 935761 Query 244331 ACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCG 244390 | ||| |||||||| | ||||||| || | |||||||| || ||| | | Sbjct 935760 ATGGGCGAACCCTCGTATGAAGGGTAGGTTCCAACCTCCTGGGCCATCTCACACGACGCC 935701 Query 244391 TCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCG 244450 ||||| || |||| ||||||||||||||||||| ||| | | ||| || | Sbjct 935700 TCGAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGGAGGTTGAGCTGGCGAGCGGCGGGC 935641 Query 244451 CAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCG 244510 || |||||| |||| | ||||||| ||||||| || ||||| || |||| ||| Sbjct 935640 GAGTCGAAGGGCATGCGGAGGGCCATGAAGGCGTCGGCAAGACCCTGGACACCGAGACCG 935581 Query 244511 ATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCG 244570 | ||| | || ||| |||| ||| |||| || | |||||||| |||||| | Sbjct 935580 ACGGGGCGATGGCGCATGTTCGAGTTTTTGGCCTCCTGAACGGGGTAGTAGTTGCGCGAG 935521 Query 244571 ATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCG 244630 || || || ||||| ||| | |||| | || | | |||| | Sbjct 935520 ATGACGCAGTCAAGGTTCTTGGTAA---------CGACCTTGGTGATCTCGTGAAGCTT- 935471 Query 244631 TACTCGTAGGGATCCTCGGCGATGGTG--ATCCTC-ACAAACTCGTTGAGGGCGACGCTG 244687 || | || || | || | || | | || || ||| || ||||| | | | Sbjct 935470 --CTTGAAG---TCATAGGTGCTGTTTTCAAAGTCGACGAACGCGGGAAGGGCAATGGAG 935416 Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747 || |||||||||||||| ||||| || | | ||||| || ||||| ||||||||| Sbjct 935415 GCAAGGTTGCAGACGGCAACCTCGTCGGGAGAAGAGTACTCGATGATCTCAGTGCAGAGG 935356 Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTG 244807 || ||||||| |||||||||||||| || || |||||| |||| ||||||||| Sbjct 935355 TTGGACGACTTGATAGTGCCCAGGTGCTGCTGGTTAGACTTGCGGTTGGCAGCGTCCTTG 935296 Query 244808 TAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCC 244867 ||||| |||||||| || || |||||| |||||| | |||| | | |||||| | | Sbjct 935295 TAGAGGATGAAGGGGCCACCAGTCTCGGTCTGGGCCTCAAGGATGGCGAACCAGAGCTTC 935236 Query 244868 CTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCG 244927 ||||||| ||| ||||| |||||||||| |||||| |||||||| ||| Sbjct 935235 TGGGCCTTGATGGTCTTGCGACCCTTGCCCTCACGCTCGTACTTCTGGTACAGGGTCTCA 935176 Query 244928 AACTCGGGGCCCCAG---ACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTC 244984 ||||| || || || ||| | || || |||||| || ||||||||||| || Sbjct 935175 AACTC---CTCCGAGTGAACGTCGGCAAGACCAGGGCACTCGGCGGGGCACATGAGGGTC 935119 Query 244985 CACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAG 245044 || || ||| || ||| ||| | || |||||||||||| |||| |||||| || | ||| Sbjct 935118 CAGTCACCGTCGGCCTCGACACGCTTCATGAAGAGGTCAGGGACCCAGAGAGCGTAGAAC 935059 Query 245045 AGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAG 245104 ||||| | | | ||| ||| || |||||| | || || | ||||| || Sbjct 935058 AGGTCACGCGCGCGAACCTCCTCCTTTCCGTGGTTCTTGCGGAGGTCAAGGAAGTCGAAA 934999 Query 245105 ACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCC 245164 ||||| | ||||||||||| | ||||| || | ||| || || ||||||||||| ||| Sbjct 934998 ACGTCCGCATGCCAGGGCTCAAGGTAGATGGCAAAGGCACCAGGGCGCTTGTTGCCACCC 934939 Query 245165 TGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAG 245224 ||||| || | || ||||| | || || || | || || || ||||| ||| Sbjct 934938 TGGTCGACGTAACGGGCGGTCGCGTCGTAGGCACGGAGCATGGGGACAATACCGTTGGAG 934879 Query 245225 TGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGA---TGGACATG 245281 | |||||||| || |||||| | ||||||| | | | |||| ||| |||| | Sbjct 934878 TAACCGTTGGTTCCGGCGATGTACGAGCCCTTGGCACGAATGTTG-TGAATGTGGAGA-- 934822 Query 245282 CCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCC 245341 || | || || || ||||||||| |||||||| |||||| |||||| ||||| Sbjct 934821 CCAATGCCACCAGCAGTCTTGGAGATCTGGGCGCAGGTCTTGAGGGTGTCGTAGATGCCG 934762 Query 245342 TCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTG 245401 || || ||| |||||| || || ||||| || |||| ||| || | ||| | Sbjct 934761 TCGATCGAGTCGTCCTTCATAGCGACGAGGAAGCACGACGACATCTGAGGGTGGGGAGTA 934702 Query 245402 CACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTC-GAGAGGAACCCGTA 245460 | | |||||| || || ||| ||||| || ||||||| |||| || | || ||| Sbjct 934701 CCAGCGTTGAAGAGGGTCGGGGAAGCGTGAGTGAAGTAGC-GCTCGGACATGAGGTTGTA 934643 Query 245461 CGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGAT-CTGCAGGGCGCACCTCATGAGGG 245519 ||||| | | |||||||||||| |||||||| | | || || | ||| | Sbjct 934642 CGTCTCAATGACCTTGTCGATGTTGTCACCGTGGATACCGATGGAAACA-CGCATAATCA 934584 Query 245520 TGTGCTGGGGCGTCTCGATGGGTCCCTCGGGTCCCTTGAGCATG---TAGGAGCGCTCGA 245576 ||||||| || ||| || ||| | | || ||| | || |||||||||| Sbjct 934583 TGTGCTGCGGACGCTC---GGCCACCTTGCCGTCAATGCGCAAGAGATATGAGCGCTCGA 934527 Query 245577 GCGTCTTGAACCCAAAGTACGAGTAGCCAAAGTC 245610 | |||||||| || ||||| |||| | ||||| Sbjct 934526 GGGTCTTGAAACCGAAGTAGTTGTAGGCGAAGTC 934493 >seq7 Length=1425097 Score = 251 bits (278), Expect = 1e-61 Identities = 381/536 (71%), Gaps = 27/536 (5%) Strand=Plus/Plus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 || ||||||||||| ||||| || |||||||||||||||||||| |||||||| ||| Sbjct 37271 CTCTTCAAGGCCATCGAGACCATCCCCTGCATCAAGAAGAAGGCCGACTGGGCCCTCCGT 37330 Query 42669 TGGATCGAGAGTCCCGACGCAACGTTCGGC-------GAGAGGCTGGTAGCCTTTACCGC 42721 ||||| | |||||| | || ||| | ||| | || | || || |||| Sbjct 37331 TGGAT------TTCCGACG-AGCGCTCGTCCTTTGCTGAGCGCCTCATTGCGTTCGCCGC 37383 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGG 42780 ||||||||| ||||| ||||| ||| | || ||||| ||||||||||||||| || || Sbjct 37384 CGTCGAGGGTATCTTTTTCTCTGGCTCGTTTGCCTCGATCTTCTGGCTCAAGAAGCGTGG 37443 Query 42781 TGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATA 42840 || |||||||| ||||| ||||| ||||| |||||| | |||||||| || || | Sbjct 37444 CCTC-ATGCCCGGCCTCACTTTCTCCAACGAGCTCATCTCGCGTGACGAGGGTCTCCACA 37502 Query 42841 GGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGG 42900 ||||||||||| || || ||| | | || | | | | || | | | | | Sbjct 37503 CCGACTTTGCCTGTCTGCTTTTCACCCATCTCCGCCGTCGCCCGCACCCCA---ACCTCA 37559 Query 42901 TCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGC 42960 | | || ||| |||||||| |||| || |||||||||| || || |||| | Sbjct 37560 TTGAGAAGATTATCCGCGAGGCCGTCAAGATTGAACAGGAGTTCCTTACCGAGGCGCTCC 37619 Query 42961 CCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCG 43020 ||||||| || |||| |||||| || ||||||||| | ||||| ||| |||||||| Sbjct 37620 CCGTGTCGCTCATCGGTATGAACGCCGGTCTCATGTGCCAATACATTGAGTTCGTCGCCG 37679 Query 43021 ACCATCTCCT-GTGCCAGATGGGTCTCAGCCGC---CTCTACAACACGCCGTGCCCCTTC 43076 ||| ||| || || | ||| || | | |||||||| || || |||||| Sbjct 37680 ACCGTCTGCTCGTCGCTCTTGG----CAACGACAAGATCTACAACTCGACGAATCCCTTC 37735 Query 43077 GACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGT 43132 ||||||||||||| ||||| || | |||||| ||||||| |||||| |||||| Sbjct 37736 GACTTTATGGAGATGATCTCTCTGCAAGGCAAGGCCAACTTCTTCGAGTCGCGCGT 37791 >seq8 Length=1386445 Score = 123 bits (136), Expect = 5e-23 Identities = 236/341 (69%), Gaps = 10/341 (3%) Strand=Plus/Minus Query 42645 AAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGG 42704 |||||||| |||||||||||||| | ||| || |||| ||||| || || Sbjct 725294 AAGAAGGCCGACTGGGCGCTCAAGTACATCACGAA---CGACATGCCGTTCCGCACTAGA 725238 Query 42705 CTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTC 42764 ||| | |||||| | || |||||||||||||||||||| | || || |||||||| Sbjct 725237 CTGATCGCCTTTGCGTGTGTGGAGGGCATCTTCTTCTCGGGATCATTTGCTGCCATCTTC 725178 Query 42765 TGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAG 42823 ||||||||| || ||| || |||| || || || |||||||| || || ||| | Sbjct 725177 TGGCTCAAGAAGCGCGGTCTC-ATGCGTGGCCTTACATTCTCGAATGAGCTTATCTCTCG 725119 Query 42824 GGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAA 42883 || ||||| | || | |||||||| ||||||| ||| | || |||| |||| Sbjct 725118 AGATGAGGGTATTCACACCGACTTTGCGTGCCTCC---TCTATGGGCATCTCAAGCACCG 725062 Query 42884 GCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTT 42943 ||| | ||| ||| ||||| | || || || || || || ||||||||||| Sbjct 725061 CTGCTCTGACGAGGAAGTCTACACCATCGTGACCGAAGCGGTTGAAATAGAGAAGGAGTT 725002 Query 42944 CCTCACGCAGTCGCTGCCCGTGT-CCCTGGTCGGCATGAAC 42983 ||| || | |||| ||| ||| | || |||| || ||| Sbjct 725001 CCTGACAGACGCGCT-CCCATGTGCGCTTATCGGTATCAAC 724962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338479941360