Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20montevideense_20[genbank_20GCA_5F001598995.1_202016- 03-01] 61 sequences; 24,872,216 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq7 141 2e-28 >seq7 Length=1425097 Score = 141 bits (156), Expect = 2e-28 Identities = 170/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || ||||| |||| ||| || || ||||| || ||||| | | Sbjct 29987 CCACCACGCAGGCGGAGAACGAGGTGAAGTGTGGACTCCTTCTGGATGTTGTAGTCCGAG 29928 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || |||||||| | || || || || ||||| |||||||| || || ||| Sbjct 29927 AGGGTACGACCGTCTTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGG---TCGGGG 29871 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || ||||| || ||||| |||||||| || |||| ||| ||| || Sbjct 29870 GGAATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCGATAGTGTCGGACGACTCG 29811 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||| || || |||||||||||||| |||||||| Sbjct 29810 ACCTCGAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAAATCTGCAT 29761 Score = 127 bits (140), Expect = 5e-24 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || || | ||| || || || | ||| || || || || || ||||||| Sbjct 30215 CCTCCACGAAGACGAAGGACAAGGTGCAACGTCGACTCCTTCTGAATGTTGTAGTCGGAA 30156 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || || || |||||||| |||||||| || || ||| Sbjct 30155 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGG---TCGGGG 30099 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || |||||||| ||||| ||||| || || |||| ||| ||| || Sbjct 30098 GGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATAGTGTCGGACGACTCA 30039 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||| ||||| || || || ||||||||||| |||||||| Sbjct 30038 ACTTCAAGAGTGATAGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCAT 29989 Score = 116 bits (128), Expect = 9e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || ||||||| || || || ||||| |||||||| | | Sbjct 29759 CCACCACGGAGACGGAGGACAAGATGAAGGGTCGACTCCTTCTGGATGTTATAGTCCGAG 29700 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || | || || || || ||||| |||||||| || ||| Sbjct 29699 AGGGTACGACCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGCGGG 29640 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || ||||| || || || || ||||| || || | || || || || Sbjct 29639 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACC 29580 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || || |||||||||||||| |||||||| Sbjct 29579 TCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAAATCTGCAT 29533 Score = 100 bits (110), Expect = 7e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | || |||||||||| || || || ||||| || ||||| | | Sbjct 29250 CCACCGCGGAGACGGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 29191 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || | || || || || ||||| |||||||| || ||| Sbjct 29190 AGGGTACGACCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGCGGG 29131 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || ||||| || || || || ||||| || || | || || || || Sbjct 29130 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACC 29071 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || ||||| ||||| || || || |||||||| Sbjct 29070 TCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGAC 29036 Score = 98.7 bits (108), Expect = 2e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 269152 ATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTC 269211 ||||||||||| |||| ||||||| ||||| || || ||||| || || ||| | || Sbjct 37631 ATCGGTATGAACGCCGGTCTCATGTGCCAATACATTGAGTTCGTCGCCGACCGTCTGCTC 37690 Query 269212 ACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTA 269271 || || || | || || | ||||| |||| ||||||||||| ||||||||| | Sbjct 37691 GTCGCTCTTGGCAACGACAAGATCTACAACTCGACGAATCCCTTCGACTTTATGGAGATG 37750 Query 269272 ATTTCGCTCGAAGGAAAGACGAACTTCTTCGA 269303 || || || |||| ||| | ||||||||||| Sbjct 37751 ATCTCTCTGCAAGGCAAGGCCAACTTCTTCGA 37782 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | || || ||||||| || || |||||||| || ||||| | Sbjct 29531 CCACCGCGGAGACGGAGGACAAGATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCCGAA 29472 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || | || || || || ||||| |||||||| || ||| Sbjct 29471 AGGGTACGACCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGCGGG 29412 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || || || ||||| || || | || || || || Sbjct 29411 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCAACC 29352 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAG 288452 || || ||||||||||| ||||| || Sbjct 29351 TCAAGAGTGATCGTCTTGCCGGTAAG 29326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179653478026358