Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20montevideense_20[genbank_20GCA_5F001598995.1_202016- 03-01] 61 sequences; 24,872,216 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq8 113 1e-19 seq13 111 3e-19 seq7 102 2e-16 >seq8 Length=1386445 Score = 113 bits (124), Expect = 1e-19 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 243585 CATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAA 243644 |||| | |||||||| |||||||| || |||||| || || |||| || || |||||||| Sbjct 724915 CATGTGCCAGTACATGGAATTCGTCGCTGACCGCCTTGTCGTCGCACTGGGATATGAGAA 724856 Query 243645 AGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAAC 243704 | |||||| | | || ||||| | || ||||||||||| ||||| ||||| ||| | Sbjct 724855 GATCTACAACGCAACCAATCCCTTCGACTGGATGGAGCTCATCTCGCTGCAAGGCAAAGC 724796 Query 243705 TAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACGC 243741 ||||| ||||| ||| ||||| || |||||| Sbjct 724795 CAACTTTTTCGAGTCGCGCGTCAGCTCGTACCAACGC 724759 >seq13 Length=761807 Score = 111 bits (122), Expect = 3e-19 Identities = 323/489 (66%), Gaps = 14/489 (3%) Strand=Plus/Plus Query 297236 TTGTCTACGATGTCTTTTGGATTGTAACTAGGGATATTAGTCGACCAACCGGTACCGATT 297295 ||||| || ||||||| || ||||| || || || || ||| || ||||| || Sbjct 184445 TTGTCGACAATGTCTTCAGGGTTGTAGCTCGGAATTGAGGTGCTCCAGCCTGTACCAATA 184504 Query 297296 CCACTCGAACCATTCACCAGAATGCTCGGAATAACAGGCACATAATACTCTGGTTCGATC 297355 ||| | || || || |||| || | ||| | || ||||| || |||||| Sbjct 184505 CCATCGGCGCCGTTGACGAGAACCAAGGGTACTGTAGGGAGGTAGTACTCGGGCTCGATC 184564 Query 297356 TTGTCACCGTCATCATACAGATATTTCAGAA---GATTATCGTCCGTATCGACGAAAACC 297412 | ||||| || ||| ||||| || || | ||| |||||| | | || || || Sbjct 184565 TGTTCACCATCTTCAACAAGATAGTTGAGGATCGGATCGTCGTCCTTGTGGAAGAGAA-- 184622 Query 297413 TGTCGAGTC-TGAGGGTTCAGTTTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACC 297471 | |||||| || ||| | ||||||||||| || || || ||||| ||||||||| Sbjct 184623 -GGCGAGTCATGCGGGGA-ATATTTGTGAAAATGTAACGAGCGCTCGCTGCATCCTTACC 184680 Query 297472 ACCCTGCAATCTCGA--ACCGAACTGGCCCTCCGGCAACAACCAG-TTGATGTTATTGCT 297528 ||||| || ||| ||| ||||| || | ||| | | || |||||||| || || Sbjct 184681 TCCCTG--ATTGCGAGTACCAAACTGACCGTTGGGC-TCGAGGAGATTGATGTTGTTACT 184737 Query 297529 TCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTG 297588 || ||| | | || || || |||||| || | || ||| |||||| ||||| Sbjct 184738 GCCCACAAAGTTTTGCGCGAGACCCACGATAGTGGCCTGGAGACTCTGTTCGCCGTGGTG 184797 Query 297589 ATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTCACGTCGGTCGTCAA 297648 ||| || | ||||| | ||| || || || | ||| |||||||||| || | || | Sbjct 184798 ATATGCTGTCTGCTCAGAAACATAGCCACTCAGCTGAGCAACCTTCAGATCAGAGGTGAT 184857 Query 297649 ATTGCGCTTGAAAGCTGAATATATCACTTTCCGTTGAGAAGGTTTGAAACCATCAACGAC 297708 || ||||| || ||| | || || |||||| ||| |||| ||||| | || Sbjct 184858 CTTCTTTTTGAAGGCGCCATAGAGGACCTTGCGTTGACCAGGCTTGAGGCCATCCGCAAC 184917 Query 297709 CGACGGAAT 297717 ||| || || Sbjct 184918 CGATGGTAT 184926 >seq7 Length=1425097 Score = 102 bits (112), Expect = 2e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 243561 GCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 243620 ||| || || |||||| | | |||||| | || ||||| || ||||| |||||||| | Sbjct 37627 GCTCATCGGTATGAACGCCGGTCTCATGTGCCAATACATTGAGTTCGTCGCCGACCGTCT 37686 Query 243621 TTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGA 243680 || |||| ||||| | || || | |||||||| | ||| ||||| | ||||||||| Sbjct 37687 GCTCGTCGCTCTTGGCAACGACAAGATCTACAACTCGACGAATCCCTTCGACTTTATGGA 37746 Query 243681 GCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGA 243716 | | || || || ||||| || | ||||||||||| Sbjct 37747 GATGATCTCTCTGCAAGGCAAGGCCAACTTCTTCGA 37782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879138030350