Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20montevideense_20[genbank_20GCA_5F001598995.1_202016- 03-01] 61 sequences; 24,872,216 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq6 212 7e-50 seq7 156 5e-33 seq8 134 2e-26 >seq6 Length=1458149 Score = 212 bits (234), Expect = 7e-50 Identities = 680/1044 (65%), Gaps = 37/1044 (4%) Strand=Plus/Minus Query 114287 TCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCG 114346 || || ||||| ||||||||||| || | |||||||| | ||| || || ||| || Sbjct 935607 TCGGCAAGACCCTGGACACCGAGACCGACGGGGCGATGGCGCATGTTCGAGTTTTTGGCC 935548 Query 114347 GTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTT 114406 || ||||| || | || | ||| || | | || || ||||| || ||||| Sbjct 935547 TCCTGAACGGGGTAGTAGTTGCGCGAGATGACGCAGTCAAGGTTCTTGGTAACGACCTTG 935488 Query 114407 GTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCA---TTGACATACTTA 114463 ||||| || |||||||| | | | ||| | ||| | | |||| | ||| || Sbjct 935487 GTGATCTCGTGAAGCTTCTTGAAGTCATAGGTGC---TGTTTTCAAAGTCGACGAACGCG 935431 Query 114464 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 114523 |||||||| || || || || || || || | ||| || | || |||||| || Sbjct 935430 GGAAGGGCAATGGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGAGAAGAGTACTCGATG 935371 Query 114524 ATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 114583 || || || || | || || ||| || ||||||| || || || || ||||| | Sbjct 935370 ATCTCAGTGCAGAGGTTGGACGACTTGATAGTGCCCAGGTGCTGCTGGTTAGACTTGCGG 935311 Query 114584 TTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 114643 || || |||||||| || ||| | || || ||||| || |||| || || || Sbjct 935310 TTGGCAGCGTCCTTGTAGAGGATGAAGGGGCCACCAGTCTCGGTCTGGGCCTCAAGGATG 935251 Query 114644 GCCTTCCAGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT---CCTC---CTC 114696 || ||||| | || | | || | ||| ||| || |||| |||| ||| Sbjct 935250 GCGAACCAGAGCTTCTGGGCCTTGA----TGGTCTTG---CGACCCTTGCCCTCACGCTC 935198 Query 114697 GTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGG--CCTCTGAGAGCCCTGGTGCC 114754 |||||| ||| |||| |||||||| || | | | | || | || || || | Sbjct 935197 GTACTTCTGGTACAGGGTCTCAAACTCCTC--CGAGTGAACGTCGGCAAGACCAGGGCAC 935140 Query 114755 TTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCT 114814 | | ||||| | ||| | ||| | ||| | |||| |||||||||||||||||||| Sbjct 935139 TCGGCGGGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTTCATGAAGAGGTCA 935080 Query 114815 GGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGA 114874 |||| ||||||||| |||| || || || |||| | || || | || || || Sbjct 935079 GGGACCCAGAGAGCGTAGAACAGGTCACGCGCGCGAACCTCCTCCTTTCCGTGGTTCTTG 935020 Query 114875 CGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGAC 114934 || | || | ||||| | | ||||| ||||| || || ||||| | || | | Sbjct 935019 CGGAGGTCAAGGAAGTCGAAAACGTCCGCATGCCAGGGCTCAAGGTAGATGGCAAAGGCA 934960 Query 114935 CCCTTACGACGA------CCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGA 114988 || | | || ||| |||||| || || | || || || | | | || Sbjct 934959 CC---AGGGCGCTTGTTGCCACCCTGGTCGACGTAACGGGCGGTCGCGTCGTAGGCACGG 934903 Query 114989 AGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCC-CGAA-TACGAGACTTATTGG 115046 ||||| || | ||||| | || | || || || || ||| |||||| | | ||| Sbjct 934902 AGCATGGGGACAATACCGTTGGAGTAACCGTTGGTTCCGGCGATGTACGAGCCCT--TGG 934845 Query 115047 CTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACT 115106 | | | | || ||||| | |||||| || || || ||| ||||| || ||||| Sbjct 934844 CACGAATGTTGTGAATGTGGAGACCAATGCCACCAGCAGTCTTGGAGATCTGGGCGCAGG 934785 Query 115107 CCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGC 115166 | |||| || ||||||| |||||||||||||| |||| | |||| |||||||| Sbjct 934784 TCTTGAGGGTGTCGTAGATGCCGTCGATCGAGTCGTCCTTCATAGCGACGAGGAAGCACG 934725 Query 115167 TCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACA 115226 |||||| || || || |||||||||||||||||||| || | ||||| |||| Sbjct 934724 ACGACATCTGAGGGTGGGGAGTACCAGCGTTGAAGAGGGTCGGGGAAGCGTGAGTGAAGT 934665 Query 115227 TACCTTGGGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATAC 115286 | | |||||| | ||| ||||| | ||| | |||| || ||||| |||| Sbjct 934664 AGCGCTCGGACATGAGGTTGTACGTCTCAATGACCTTGTCGATGTTGTCACCGTGGATAC 934605 Query 115287 CGATCGAGACCCGCATAAACATGT 115310 |||| || || ||||||| ||||| Sbjct 934604 CGATGGAAACACGCATAATCATGT 934581 >seq7 Length=1425097 Score = 156 bits (172), Expect = 5e-33 Identities = 367/545 (67%), Gaps = 7/545 (1%) Strand=Plus/Minus Query 125748 CCAG-CTTGCCGTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTG 125806 |||| |||| | ||| || || ||| |||||||||||| | ||| || | || | Sbjct 37812 CCAGACTTGGCATAGGCCGACACGCGCGACTCGAAGAAGTTGGCCTTGCCTTGCAGAGAG 37753 Query 125807 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACC-CCAATCTG 125865 || |||||||||| || || || ||| | ||||| | || ||| | |||| Sbjct 37752 ATCATCTCCATAAAGTCGAAGGGATTCGTCGAGTTGTAGATC-TTGTCGTTGCCAAGAGC 37694 Query 125866 TTTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACC 125925 ||| ||||| || | |||| |||||||||| | |||| | | ||||||||| Sbjct 37693 GACGAGCAGACGGTCGGCGACGAACTCAATGTATTGGCACATGAGACCGGCGTTCATACC 37634 Query 125926 GATGAGGTTACATGGG-AGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCC 125984 |||||| ||| ||| ||||| || | |||| ||| ||||| | ||||| || | Sbjct 37633 GATGAGCG-ACACGGGGAGCGCCTCGGTAAGGAACTCCTGTTCAATCTTGACGGCCTCGC 37575 Query 125985 GCACGATGGCGTGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCA 126044 | | || | |||| || || | | ||| | | |||| || Sbjct 37574 GGATAATCTTCTCAATGAGGTTGGGGTGCGGGCGACGGCGGAGATGGGTGAAAAGCAGAC 37515 Query 126045 CGGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTC 126104 |||||| || |||||||||||||||||| |||||||| || || ||||| || | Sbjct 37514 AGGCAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAAGTGAGGC 37455 Query 126105 CTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGA 126164 | |||||||| || |||||||| | |||||| |||| ||| || || ||||| |||| Sbjct 37454 CGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATCGAGGCAAACGAGCCAGAGAAAAAGA 37395 Query 126165 TTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGA-GCGCGACTTTGTGTCA 126223 | ||||| || |||||||||| ||| |||||||||||||| | ||| || | | Sbjct 37394 TACCCTCGACGGCGGCGAACGCAATGAGGCGCTCAGCAAAGGACGAGCG-CTCGTCGGAA 37336 Query 126224 AACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCA 126283 | ||| | ||||| | ||||| |||| ||| || |||| ||||| ||| || | Sbjct 37335 ATCCAACGGAGGGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGCCTTG 37276 Query 126284 AAGAG 126288 ||||| Sbjct 37275 AAGAG 37271 >seq8 Length=1386445 Score = 134 bits (148), Expect = 2e-26 Identities = 199/277 (72%), Gaps = 14/277 (5%) Strand=Plus/Plus Query 125917 GTTCATACCGATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCAC 125976 ||| |||||||| || ||||||||||||||| | |||| ||||||| ||||| || Sbjct 724962 GTTGATACCGATAAGCGCACATGGGAGCGCGTCTGTCAGGAACTCCTTCTCTATTTCAAC 725021 Query 125977 GGCTTCCCGCACGATGGCGT-GAATGGTGTCCACCCCAGGTCTATTGCGCA----AAGTC 126031 ||||| |||||||| || || | ||| | ||| | | || | | | Sbjct 725022 CGCTTCGGTCACGATGGTGTAGACT----TCCTCGTCAGAGCAGCGGTGCTTGAGATGCC 725077 Query 126032 --TTGAAGAGTTCCACGGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCAT 126089 | || ||| |||| |||| || ||| | |||||| || || ||||| || |||| Sbjct 725078 CATAGAGGAGG--CACG-CAAAGTCGGTGTGAATACCCTCATCTCGAGAGATAAGCTCAT 725134 Query 126090 TCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATG 126149 ||||||| || || |||||||||| |||||||| | |||||| || ||| ||||| Sbjct 725135 TCGAGAATGTAAGGCCACGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGCAGCAAATG 725194 Query 126150 AACCCGAGAAGAAGATTCCCTCCACACACGCGAACGC 126186 | |||||||||||||| |||||||||||||| || || Sbjct 725195 ATCCCGAGAAGAAGATGCCCTCCACACACGCAAAGGC 725231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353144517880