Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20montevideense_20[genbank_20GCA_5F001598995.1_202016- 03-01] 61 sequences; 24,872,216 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq6 277 2e-69 >seq6 Length=1458149 Score = 277 bits (306), Expect = 2e-69 Identities = 993/1539 (65%), Gaps = 44/1539 (3%) Strand=Plus/Plus Query 93896 CCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGA 93955 |||||||||| |||||||| || || || || |||||||| ||||| ||||| | Sbjct 934680 CCCCGACCCTCTTCAACGCTGGTACTCCCCACCCTCAGATGTCGTCGTGCTTCCTCGTCG 934739 Query 93956 CGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCT 94015 | | |||| |||||| ||| ||| || | ||||| ||||||| ||| || |||| Sbjct 934740 CTATGAAGGACGACTCGATCGACGGCATCTACGACACCCTCAAGACCTGCGCCCAGATCT 934799 Query 94016 CAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACA 94075 | || || || || || || || | ||| || | ||||||| ||| || |||| Sbjct 934800 CCAAGACTGCTGGTGGCATTGGTCTCCACATTCACAACATTCGTGCCAAGGGCTCGTACA 934859 Query 94076 TCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACG 94135 || ||| ||||| || ||||||||| | ||||| |||||||| | || || ||| Sbjct 934860 TCGCCGGAACCAACGGTTACTCCAACGGTATTGTCCCCATGCTCCGTGCCT---ACGACG 934916 Query 94136 CG---GCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATC 94192 || || || ||||| ||||||||||| | | | ||| | || || |||| | Sbjct 934917 CGACCGCCCGTTACGTCGACCAGGGTGGCAACAAGCGCCCTGGTGCCTTTGCCATCTACC 934976 Query 94193 TCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACG 94252 | ||||||||||| |||||||| | ||| | ||||| || ||||||||||| || | Sbjct 934977 TTGAGCCCTGGCATGCGGACGTTTTCGACTTCCTTGACCTCCGCAAGAACCACGGAAAGG 935036 Query 94253 ATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAAC 94312 | || | || | ||||| ||||||||||||||||| || ||||| || ||||| | Sbjct 935037 AGGAGGTTCGCGCGCGTGACCTGTTCTACGCTCTCTGGGTCCCTGACCTCTTCATGAAGC 935096 Query 94313 GCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCG 94372 | |||||| || | ||||| || | || ||| || || || || || ||| Sbjct 935097 GTGTCGAGGCCGACGGTGACTGGACCCTCATGTGCCCCGCCGAGTGCCCTGGTCTTGCCG 935156 Query 94373 ACGTT-TGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCC 94431 ||||| | | | | ||||| | |||| ||||| ||||||||| Sbjct 935157 ACGTTCACTCGGAGGAG-TTTGAGACCCTGTACCAGAAGTACGAGCGTGAGGGCAAGGGT 935215 Query 94432 AGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACG 94491 | ||| || | || |||||| ||| ||| | || | ||| ||||| Sbjct 935216 CGCAAGACCATCAAGGCCCAGAAGCTCTGGTTCGCCATCCTTGAGGCCCAGACCGAGACT 935275 Query 94492 GGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTC 94551 ||| |||| |||| | | ||||||| ||| |||| |||||| |||||||||||||| Sbjct 935276 GGTGGCCCCTTCATCCTCTACAAGGACGCTGCCAACCGCAAGTCTAACCAGCAGCACCTG 935335 Query 94552 GGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAG 94611 || |||||| || || || ||||| ||||| ||||||| ||||||| |||||| Sbjct 935336 GGCACTATCAAGTCGTCCAACCTCTGCACTGAGATCATCGAGTACTCTTCTCCCGACGAG 935395 Query 94612 ATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGA-GATGCCTACA- 94669 |||| || || ||||| | |||||| ||| || | ||||| ||| || ||| Sbjct 935396 GTTGCCGTCTGCAACCTTGCCTCCATTGCCCTTCCCGCGTTCGT-CGACTTTGAAAACAG 935454 Query 94670 CGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGT--CTT 94727 | ||| |||| || ||||| | || | |||| | | | Sbjct 935455 CACCTATGACTTC----------AAGAAGCTTCACGAGATCAC--CAAGGTCGTTACCAA 935502 Query 94728 GAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAA 94787 |||||| || | || ||| |||| ||||||||| | |||||| | ||||| || Sbjct 935503 GAACCTTGACTGCGTCATCTCGCGCAACTACTACCCCGTTCAGGAGGCCAAAAACTCGAA 935562 Query 94788 CCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGAT 94847 | || ||||| ||| |||| |||| ||||||||| | || ||||| | || | Sbjct 935563 CATGCGCCATCGCCCCGTCGGTCTCGGTGTCCAGGGTCTTGCCGACGCCTTCATGGCCCT 935622 Query 94848 GCGTCTGCCCTACGACTCTGTCGACGC-GGCGGGTTTGAATTTGAACATATTCGAAAGCA 94906 || |||||| |||||| || ||| || | | || | | || ||||| | || Sbjct 935623 CCGCATGCCCTTCGACTCGCCCGCCGCTCGCCAG-CTCAACCTCCAGATCTTCGAGACCA 935681 Query 94907 TTTATTACGGGGCCATGAAACAATCCGTC----CACTTGGCCAGATCGGACGGCGGGCCA 94962 | || ||| || | | | |||| | ||||| ||| | || | Sbjct 935682 TCTACCACGCTGCTCT----CGAGGCGTCGTGTGAGATGGCC---CAGGAGGTTGGAACC 935734 Query 94963 CACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGT 95022 || || | | || |||||| | ||||||| ||||||| ||||| ||||| Sbjct 935735 TACCCTTCATACGAGGGTTCGCCCATCTCGCAGGGCAAGCTTCAGTTTGACCTTTGGGGC 935794 Query 95023 GTGAAGCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAACACGGT 95082 | ||| | | || | ||||||| | || || | | | ||| ||||| Sbjct 935795 CGTATCCCCACCGACCTCTGGAACTGGGACGAGCTCCGTGAGAAGATCGCCAAGAACGGT 935854 Query 95083 GTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGC 95142 || ||| |||| || || || || ||||| || || ||||| | ||||| |||||| Sbjct 935855 GTTCGCAACTCGCTTCTCGTCGCACCTATGCCTACTGCTTCCACCTCTCAGATTCTTGGC 935914 Query 95143 AACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGG 95202 ||||||| ||||| |||| |||||| | | ||| | | || ||||| | || Sbjct 935915 TGGAACGAGTGCTTCGAGCCCTACACCTCGATGCTCTACTCCCGCCGTGTGCTTTCGGGT 935974 Query 95203 GAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGGGT 95262 || |||| ||| || | ||||| || ||||| | || | | |||| | Sbjct 935975 GACTTCCAGGTCGTCTGCCCCTGGCTCCTCCGTGACCTCATCAACCTCGACCTCTGGGAT 936034 Query 95263 GACAAGGTCAAGAACCAACTGCTACGCGCC---AACGGCTCCGTCCAGAACATCCCGCAA 95319 ||||| || ||| || || | |||| || || ||||| |||| || | Sbjct 936035 GACAA---CATGAAGCAGCTCGTCATCGCCTCTGGTGGTTCGATCCAGCACATTCCTGGA 936091 Query 95320 ATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTGATA 95379 || || || || |||||| || |||||||||| || |||||||| ||||| | | Sbjct 936092 ATTCCCGATGAGATCAAGTCGATCTACAAGACTGTCTGGGAGATTTCGCAGAAAGCAGTT 936151 Query 95380 CTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAG 95418 |||||| || || | ||| || |||| ||| |||| Sbjct 936152 ATCGACCTTGCCGCTGACCGTGGTGCCTTTATCGACCAG 936190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494722822773560