Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20montevideense_20[genbank_20GCA_5F001598995.1_202016- 03-01] 61 sequences; 24,872,216 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq6 134 1e-26 seq7 105 7e-18 >seq6 Length=1458149 Score = 134 bits (148), Expect = 1e-26 Identities = 734/1157 (63%), Gaps = 45/1157 (4%) Strand=Plus/Minus Query 153384 TCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATG 153443 ||| | |||||||| || || ||||||||||| |||||||||| ||||| |||| | Sbjct 935637 TCGAAGGGCATGCGGAGGGCCATGAAGGCGTCGGCAAGACCCTGGACACCGAGACCGACG 935578 Query 153444 GGTCGATGC------TTCTCGTTGCTGCGCCTCGCGCTCGCTATGGGATAGTGATTGCGA 153497 || ||||| ||| ||| || ||||| | || || |||| ||||| Sbjct 935577 GGGCGATGGCGCATGTTCGAGTTTTTG-GCCTCCTGAACG-----GGGTAGTAGTTGCGC 935524 Query 153498 TCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAA 153557 ||| | || ||||| || || || || ||| | | ||| |||| ||| Sbjct 935523 GAGATGACGCAGTCAAGGTTCTTGGTAACGACCTTGGTGATCTCGTGAAGCTTCTTGAAG 935464 Query 153558 TCATAGGTCAT---TTC---GTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGA 153611 |||||||| | ||| ||||||| |||| || | |||||| || || || Sbjct 935463 TCATAGGTGCTGTTTTCAAAGTCGACGA--ACGCGG-GA---AGGGCAATGGAGGCAAGG 935410 Query 153612 TTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTG 153671 || |||||||| ||| |||| ||||| | |||||| | |||||||||| Sbjct 935409 TTGCAGACGGCAACCTCGTCGGGAGAAGAGTACTCGATGATCTCAGTGCAGAGGTTGGAC 935350 Query 153672 CATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGC 153731 | || || ||||| | ||||| || ||||| ||| ||||| ||| |||| Sbjct 935349 GACTTGATAGTGCCCAGGTGCTGCTGGTTAGACTTGCGGTTGGCAGCGTCCTTGTAGAGG 935290 Query 153732 ATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATA---AACCTATGCAGGTCCTGC 153788 ||| | || || || |||||| || | || | ||| |||| || | ||| Sbjct 935289 ATGAAGGGGCCACCAGTCTCGGTCTGGGCCTCAAGGATGGCGAACCAGAGC---TTCTGG 935233 Query 153789 GCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAAC 153848 || | || ||| |||||| | |||||| || |||||| ||||||| Sbjct 935232 GCCTTGATGGTCTTGCGACCCTTGCCCTCACGCTCGTACTTCTGGTACAGGGTCTCAAAC 935173 Query 153849 TCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATA 153908 || || || |||||| || || || |||| || ||||| || | ||| | Sbjct 935172 TCCTCCGAGTGAACGTCGGCAAGACCAGGGCACTCGGCGGGGCACATGAGGGTCCAGTCA 935113 Query 153909 TCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCG 153968 ||||||| | ||| || |||||| || || || |||||||| ||||| | ||||| Sbjct 935112 CCGTCGGCCTCGACACGCTTCATGAAGAGGTCAGGGACCCAGAGAGCGTAGAACAGGTCA 935053 Query 153969 CGCGCCTTGCAATCCTCCGCGC--CCATGTTGCGTTTCAGA--TTGAGCACGCTATAGAT 154024 ||||| || | ||||| | || || | | || | || | || | | | | Sbjct 935052 CGCGC---GCGAACCTCCTCCTTTCCGTGGTTC-TTGCGGAGGTCAAGGAAGTCGAAAAC 934997 Query 154025 GTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTTT---CCGCCCTG 154081 ||| || |||||||| |||| ||||| ||| | |||||| ||||| || ||||| Sbjct 934996 GTCCGCATGCCAGGGCTCAAGGTAGATGGCAAAGGCACCAGGGCGCTTGTTGCCACCCTG 934937 Query 154082 ATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGT 154141 ||||||| || | | || | || | || | |||||| | | ||| | | | Sbjct 934936 GTCGACGTAACGGGCGGTCGCGTCGTAGGCACGGAGCATGGGGACAATACCGTTGGAGTA 934877 Query 154142 GCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAAT 154201 |||||||| ||| | ||| ||| || | | || | || | ||||| Sbjct 934876 ACCGTTGGTTCCGGCGATGTACGAGCCCTTGGCACGAATGTTGTGAATGTGGAGACCAAT 934817 Query 154202 GCCGCC-GCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATGCCGTCGA 154260 ||| || || || ||| || || |||||| || || |||||||||||||| Sbjct 934816 GCCACCAGCAGT-CTTGGAGATCTGGGCGCAGGTCTTGAGGGTGTCGTAGATGCCGTCGA 934758 Query 154261 TGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCG 154320 | ||||| | ||| | ||| ||||| |||| || || | | || || | Sbjct 934757 TCGAGTCGTCCTTCATAGCGACGAGGAAGCACGACGACATCTGAGGGTGGGGAGTACCAG 934698 Query 154321 CCGAAAAGAGGGTGGGACTCGCGTGCGTAAAC-AGTTTTTGGCTCATCATGCGGTACGTT 154379 | |||||||| || ||||| || || || | || ||| | | |||||| Sbjct 934697 CGTTGAAGAGGGTCGGGGAAGCGTGAGTGAAGTAGCGCTCGGA-CATGAGGTTGTACGTC 934639 Query 154380 TCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGC 154439 || ||| | | ||||| | || ||||| || |||| | || ||||| | ||||||| Sbjct 934638 TCAATGACCTTGTCGATGTTGTCACCGTGGATACCGATGGAAACACGCATAATCATGTGC 934579 Query 154440 TGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATATCCATTTTCGAGGGTTTTG 154499 |||||||| ||||| || | |||||| |||||||||| |||||||| ||| Sbjct 934578 TGCGGACGCTCGGCCACCTTGCCGTCAATGCGCAAGAGATATGAGCGCTCGAGGGTCTTG 934519 Query 154500 TAACCGAAATACTTGTA 154516 ||||||| || ||||| Sbjct 934518 AAACCGAAGTAGTTGTA 934502 >seq7 Length=1425097 Score = 105 bits (116), Expect = 7e-18 Identities = 143/196 (73%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | ||||| ||| || || || || |||| | Sbjct 29954 GACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGACCGTCTTCAAGCTGCTTGCCGGCA 29895 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| |||||||| ||||| || || || || || ||||| ||| | || | || | Sbjct 29894 AAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTC-CTGAATCTTCGCCTTCAC 29836 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||||||| |||||| ||||||| || | || || ||||| ||||| | Sbjct 29835 GTTG-TCGATAGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGAGTCT 29777 Query 138599 TTACAAAAATCTGCAT 138614 | || ||||||||||| Sbjct 29776 TGACGAAAATCTGCAT 29761 Score = 102 bits (112), Expect = 8e-17 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || | ||| | | | |||||||| || ||||| ||||| Sbjct 29759 CCACCACGGAGACGGAGGACAAGATGAAGGGTCGACTCCTTCTGGATGTTATAGTCCGAG 29700 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||||||| || || |||| | |||| |||||||| ||||| || || Sbjct 29699 AGGGTACGACCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGCGGG 29640 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| | || | || | |||| | | |||||| | ||||| | Sbjct 29639 ATGCCCTCCTTGTCC-TGAATCTTGGCCTTGACGTTGT-CGATGGTGTCCGAAGACTCGA 29582 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || ||||| ||||| || || ||||||||||| Sbjct 29581 CCTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAAATCTGCAT 29533 Score = 102 bits (112), Expect = 8e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||| | ||| || ||||||||| || || || | Sbjct 30182 GACTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCG 30123 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| |||||||| ||||| || || || || || ||||| ||| || || | | Sbjct 30122 AAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACA 30063 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||||||| |||||| || || | || | || || ||||| || || || Sbjct 30062 TTG-TCGATAGTGTCGGACGACTCAACTTCAAGAGTGATAGTCTTGCCAGTGAGGGTCTT 30004 Query 138600 TACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 30003 GACGAAAATCTGCAT 29989 Score = 98.7 bits (108), Expect = 1e-15 Identities = 295/446 (66%), Gaps = 21/446 (5%) Strand=Plus/Plus Query 52392 GCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCC 52451 || |||||| | | || |||||| |||||||| | ||||| || ||| |||||| Sbjct 37358 GCTGAGCGCCTCATTGCGTTCGCCGCCGTCGAGGGTATCTTTTTCTCTGGCTCGTTTGCC 37417 Query 52452 GCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTG 52511 | ||||| | | || | | ||| | ||||||||||| || ||| ||||||| | Sbjct 37418 TCGATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCTCACTTTCTCCAACGAGCTC 37477 Query 52512 ATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTG 52571 || ||||| ||||| || || ||||| |||||||| || ||| || | | | | Sbjct 37478 ATCTCGCGTGACGAGGGTCTCCACACCGACTTTGCCTG--TCTGCT---TTTCACCCATC 37532 Query 52572 ACCGAAAAATTGGATTCGGACACGATCCT------GAGCATGTTCAAGGAGGCGGTGGCT 52625 ||| | | || || | | ||| || || || ||||| || Sbjct 37533 TCCG--CCGTCG--CCCGCACCCCAACCTCATTGAGAAGATTATCCGCGAGGCCGTCAAG 37588 Query 52626 ATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAG 52685 || ||| ||||||| |||| | ||||| || || ||| | || |||||||| | | Sbjct 37589 ATTGAACAGGAGTTCCTTACCGAGGCGCTCCCCGTGTCGCTCATCGGTATGAACGC-CGG 37647 Query 52686 TC-CATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTC-GGGCAGC 52743 || ||||||| | ||||| ||||| || || || |||||| | || |||| |||| | Sbjct 37648 TCTCATGTGCCAATACATTGAGTTCGTCGCCGACCGTCTGCTCGT--CGCTCTTGGCAAC 37705 Query 52744 CA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGC 52802 | ||| || |||| | ||||| || || |||||| | | || || || | ||| Sbjct 37706 GACAAGATCTACAACTCGACGAATCCCTTCGACTTTATGGAGATGATCTCTCTGCAAGGC 37765 Query 52803 AAGACCAACTTTTTCGAGAAGCGAGT 52828 ||| ||||||| |||||| ||| || Sbjct 37766 AAGGCCAACTTCTTCGAGTCGCGCGT 37791 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| | ||| | | | |||||||| || ||||||||||| Sbjct 29250 CCACCGCGGAGACGGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 29191 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||||||| || || |||| | |||| |||||||| ||||| || || Sbjct 29190 AGGGTACGACCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGCGGG 29131 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| | || | || | ||| || | |||||| | ||||| | Sbjct 29130 ATGCCCTCCTTGTC-CTGAATCTTGGCCTTGACGTTG-TCGATGGTGTCCGAAGACTCGA 29073 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 |||| | || | || || || || || || || || Sbjct 29072 CCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGAC 29036 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || | ||| | | | ||||||||||| ||||||||||| Sbjct 29531 CCACCGCGGAGACGGAGGACAAGATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCCGAA 29472 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||||||| || || |||| | |||| |||||||| ||||| || || Sbjct 29471 AGGGTACGACCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGCGGG 29412 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | |||||| | ||||| ||| Sbjct 29411 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCAACC 29352 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAG 138593 || | || | ||| || || || || Sbjct 29351 TCAAGAGTGATCGTCTTGCCGGTAAG 29326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262021599920