Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20montevideense_20[genbank_20GCA_5F001598995.1_202016- 03-01] 61 sequences; 24,872,216 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq7 123 2e-23 seq1 91.5 1e-13 seq10 86.0 6e-12 >seq7 Length=1425097 Score = 123 bits (136), Expect = 2e-23 Identities = 288/432 (67%), Gaps = 17/432 (4%) Strand=Plus/Plus Query 47145 ATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTAC 47204 || || |||||| ||||||||| |||| ||||| ||| ||||| |||| || | Sbjct 37370 ATTGCGTTCGCCGCCGTCGAGGGTATCTTTTTCTCTGGCTCGTTTGCCTCGATCTTCTGG 37429 Query 47205 ATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGAC 47264 | || | || | |||||||||||||| || ||||||||| |||||| | ||| Sbjct 37430 CTCAAGAAGCGTGGCCTCATGCCCGGCCTCACTTTCTCCAACGAGCTCATCTCGCGTGAC 37489 Query 47265 GAAGGCCTGCACACCAACTTTGCCTGTCT-CTACT---ACAACACTAGAGTCGATCAAAA 47320 || || || |||||| ||||||||||||| || | || | | |||| | Sbjct 37490 GAGGGTCTCCACACCGACTTTGCCTGTCTGCTTTTCACCCATCTCCGCCGTCGCCC---- 37545 Query 47321 GTTGGACGTGCCCACCGTCAGCGACATGTTT---GCCGAAGCCGTCGCCATTGAGATGGA 47377 | || |||| | ||| || | | || ||| |||||| ||||| ||| Sbjct 37546 ---GCAC---CCCAACCTCATTGAGAAGATTATCCGCGAGGCCGTCAAGATTGAACAGGA 37599 Query 47378 GTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAA 47437 ||| | ||||||| || |||| || | | || |||||||| | | ||| | | Sbjct 37600 GTTCCTTACCGAGGCGCTCCCCGTGTCGCTCATCGGTATGAACGCCGGTCTCATGTGCCA 37659 Query 47438 GTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCA 47497 ||||| || || ||||||||||| |||||||| || | |||||| ||| | Sbjct 37660 ATACATTGAGTTCGTCGCCGACCGTCTGCTCGTCGCTCTTGGCAACGACAAGATCTACAA 37719 Query 47498 CACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTT 47557 | | |||||| ||||| |||||| | | || || || | |||||| ||||||| || Sbjct 37720 CTCGACGAATCCCTTCGACTTTATGGAGATGATCTCTCTGCAAGGCAAGGCCAACTTCTT 37779 Query 47558 CGAGAAGCGCGT 47569 |||| |||||| Sbjct 37780 CGAGTCGCGCGT 37791 Score = 104 bits (114), Expect = 2e-17 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || |||| | |||||||| ||||| || |||||||||||| Sbjct 29687 TCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTG 29628 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| || || ||||| ||||| ||| |||||||| | |||||| || | ||| | Sbjct 29627 TCCTGAATCTTGGCCTTGACGTTGT-CGATGGTGTCCGAAGACTCGACCTCAAGGGTGAT 29569 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| || ||||| || || ||||||||||| Sbjct 29568 GGTCTTGCCAGTGAGAGTCTTGACGAAAATCTGCAT 29533 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975 ||| ||||| || ||||| ||||| ||| | ||||| || || ||||| || || Sbjct 30186 CGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCC 30127 Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 ||| |||| | |||||||| ||||| || ||||||||||||||| ||| ||| ||| Sbjct 30126 CGCGAAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTT 30067 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | | |||| ||||| | ||| ||||| | || | || ||||| || || || Sbjct 30066 CACATTGTCGATAGTGTCGGACGACTCAACTTCAAGAGTGATAGTCTTGCCAGTGAGGGT 30007 Query 127096 TTTTACAAAAATCTGCAT 127113 || || ||||||||||| Sbjct 30006 CTTGACGAAAATCTGCAT 29989 Score = 98.7 bits (108), Expect = 9e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || | || ||| || || ||||| || || Sbjct 29957 GTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGACCGTCTTCAAGCTGCTTGCCG 29898 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | |||||||| ||||| || ||||||||||||||| || ||| ||| Sbjct 29897 GCAAAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTCGCCTTC 29838 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | ||||| ||| ||||| | |||||| |||| ||| | || ||||| || ||||| Sbjct 29837 ACGTTGT-CGATAGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGAGT 29779 Query 127096 TTTTACAAAAATCTGCAT 127113 || || ||||||||||| Sbjct 29778 CTTGACGAAAATCTGCAT 29761 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | || | ||| | || ||||| ||||| || ||||| || Sbjct 29531 CCACCGCGGAGACGGAGGACAAGATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCCGAA 29472 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| || || ||||| || || || |||| | |||||||| ||||| || Sbjct 29471 AGGGTACGACCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGCGGG 29412 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| || ||||| |||| |||| |||||||| | ||| || Sbjct 29411 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG-TCGATGGTGTCCGAAGACTCAAC 29353 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAG 127092 || | || | ||| |||||||| || Sbjct 29352 CTCAAGAGTGATCGTCTTGCCGGTAAG 29326 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | || | ||| | || ||||| || || || ||||| || Sbjct 29250 CCACCGCGGAGACGGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 29191 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| || || ||||| || || || |||| | |||||||| ||||| || Sbjct 29190 AGGGTACGACCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGCGGG 29131 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| || || ||||| |||| |||| |||||||| | |||||| Sbjct 29130 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTG-TCGATGGTGTCCGAAGACTCGAC 29072 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 || | ||| | || ||||| || || || || || Sbjct 29071 CTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGAC 29036 >seq1 Length=3521688 Score = 91.5 bits (100), Expect = 1e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| |||| | |||||||| || || || |||||||||||| Sbjct 2364829 TCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTG 2364888 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||| ||| ||||| |||| |||| ||||||| |||||| |||| ||| | Sbjct 2364889 TCCTGGATCTTCGCCTTGACGTTG-TCGATCGTGTCCGACGACTCGACCTCGAGGGTGAT 2364947 Query 127078 CGTTTTGCCGGTCAGAGTTTTTAC 127101 || |||||||| || || || || Sbjct 2364948 GGTCTTGCCGGTGAGGGTCTTAAC 2364971 >seq10 Length=927812 Score = 86.0 bits (94), Expect = 6e-12 Identities = 132/186 (71%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || | ||||| || || ||||| || || Sbjct 77097 GTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 77038 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | |||||||| ||||| || ||||||||||||||| ||| || |||| Sbjct 77037 GCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 76978 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| |||||| | ||| || |||| ||| | || ||||| || || || Sbjct 76977 ACGTTG-TCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGT 76919 Query 127096 TTTTAC 127101 || || Sbjct 76918 CTTGAC 76913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500437430640