Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20montevideense_20[genbank_20GCA_5F001598995.1_202016- 03-01] 61 sequences; 24,872,216 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq6 212 8e-50 seq7 145 9e-30 seq8 122 1e-22 >seq6 Length=1458149 Score = 212 bits (234), Expect = 8e-50 Identities = 676/1039 (65%), Gaps = 27/1039 (3%) Strand=Plus/Minus Query 116248 TCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCG 116307 || || ||||| ||||||||||| || | |||||||| | ||| || || ||| || Sbjct 935607 TCGGCAAGACCCTGGACACCGAGACCGACGGGGCGATGGCGCATGTTCGAGTTTTTGGCC 935548 Query 116308 GTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTT 116367 || ||||| || | || | ||| || | | || || ||||| || ||||| Sbjct 935547 TCCTGAACGGGGTAGTAGTTGCGCGAGATGACGCAGTCAAGGTTCTTGGTAACGACCTTG 935488 Query 116368 GTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCA---TTGACATACTTA 116424 ||||| || |||||||| | | | ||| | ||| | | |||| | ||| || Sbjct 935487 GTGATCTCGTGAAGCTTCTTGAAGTCATAGGTGC---TGTTTTCAAAGTCGACGAACGCG 935431 Query 116425 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 116484 |||||||| || || || || || || || | ||| || | || |||||| || Sbjct 935430 GGAAGGGCAATGGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGAGAAGAGTACTCGATG 935371 Query 116485 ATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 116544 || || || || | || || ||| || ||||||| || || || || ||||| | Sbjct 935370 ATCTCAGTGCAGAGGTTGGACGACTTGATAGTGCCCAGGTGCTGCTGGTTAGACTTGCGG 935311 Query 116545 TTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 116604 || || ||||||||||| || | || || ||||| || |||| || || || Sbjct 935310 TTGGCAGCGTCCTTGTAGAGGATGAAGGGGCCACCAGTCTCGGTCTGGGCCTCAAGGATG 935251 Query 116605 GCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT---CCTC---CTC 116657 || ||| | | || | | || | ||| ||| || |||| |||| ||| Sbjct 935250 GCGAACCAGAGCTTCTGGGCCTTGA----TGGTCTTG---CGACCCTTGCCCTCACGCTC 935198 Query 116658 GTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCCTT 116717 |||||| ||| |||| ||||||||| || | | || | || || || || Sbjct 935197 GTACTTCTGGTACAGGGTCTCAAACTCCTCCGAGTGAACGTCGGCAAGACCAGGGCACTC 935138 Query 116718 ATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGG 116777 | || || | ||| | ||| | ||| | |||| || ||||||||||||||||| || Sbjct 935137 GGCGGGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTTCATGAAGAGGTCAGG 935078 Query 116778 GATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACG 116837 || |||||| || |||| || || || |||| | || || | || || || || Sbjct 935077 GACCCAGAGAGCGTAGAACAGGTCACGCGCGCGAACCTCCTCCTTTCCGTGGTTCTTGCG 935018 Query 116838 CAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC 116897 | || | ||||| | | ||||| ||||| || || ||||| | || | | || Sbjct 935017 GAGGTCAAGGAAGTCGAAAACGTCCGCATGCCAGGGCTCAAGGTAGATGGCAAAGGCACC 934958 Query 116898 CTTGCGACGA---CCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCAT 116954 ||| ||| |||||| || || | || || |||| | | || ||||| Sbjct 934957 AGGGCGCTTGTTGCCACCCTGGTCGACGTAACGGGCGGTCGCGTCGTAGGCACGGAGCAT 934898 Query 116955 TGGAATGATACCATCAGATTGGCCATTTGTCCCC-CGAA-TACGAGACTTGTTGGCTCTG 117012 || | ||||| | || | || || || || ||| |||||| | | |||| | Sbjct 934897 GGGGACAATACCGTTGGAGTAACCGTTGGTTCCGGCGATGTACGAGCCCT--TGGCACGA 934840 Query 117013 ACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTG 117072 | | ||| ||||| | |||||| || || || ||| ||||| || ||||| | || Sbjct 934839 ATGTTGTGAATGTGGAGACCAATGCCACCAGCAGTCTTGGAGATCTGGGCGCAGGTCTTG 934780 Query 117073 AGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGAC 117132 || || ||||||| || ||||||||||| |||| | |||| ||||||||| |||| Sbjct 934779 AGGGTGTCGTAGATGCCGTCGATCGAGTCGTCCTTCATAGCGACGAGGAAGCACGACGAC 934720 Query 117133 ATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT 117192 || || || || |||||||||||||||||||| || | ||||| |||| | Sbjct 934719 ATCTGAGGGTGGGGAGTACCAGCGTTGAAGAGGGTCGGGGAAGCGTGAGTGAAGTAGCGC 934660 Query 117193 TGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATT 117252 | |||||| | ||| ||||| | ||| | |||| || ||||| |||||||| Sbjct 934659 TCGGACATGAGGTTGTACGTCTCAATGACCTTGTCGATGTTGTCACCGTGGATACCGATG 934600 Query 117253 GAGACCCGCATAAACATGT 117271 || || ||||||| ||||| Sbjct 934599 GAAACACGCATAATCATGT 934581 >seq7 Length=1425097 Score = 145 bits (160), Expect = 9e-30 Identities = 367/546 (67%), Gaps = 9/546 (2%) Strand=Plus/Minus Query 127221 CCAG-CTTGCCGTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTG 127279 |||| |||| | ||| || || ||| |||||||||||| | ||| || | || | Sbjct 37812 CCAGACTTGGCATAGGCCGACACGCGCGACTCGAAGAAGTTGGCCTTGCCTTGCAGAGAG 37753 Query 127280 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACC-CCAATCTG 127338 || |||||||||| || || || ||| | ||||| | || ||| | |||| Sbjct 37752 ATCATCTCCATAAAGTCGAAGGGATTCGTCGAGTTGTAGATC-TTGTCGTTGCCAAGAGC 37694 Query 127339 TTTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACC 127398 ||| ||||| || | |||| |||||||||| | |||| | | ||||||||| Sbjct 37693 GACGAGCAGACGGTCGGCGACGAACTCAATGTATTGGCACATGAGACCGGCGTTCATACC 37634 Query 127399 GATGAGGTTACATGGG-AGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCC 127457 |||||| ||| ||| ||||| || | |||| ||| ||||| | || || || | Sbjct 37633 GATGAGCG-ACACGGGGAGCGCCTCGGTAAGGAACTCCTGTTCAATCTTGACGGCCTCGC 37575 Query 127458 GTACGATGGCGTGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCA 127517 | | || | ||| || || | | ||| | | |||| || | Sbjct 37574 GGATAATCTTCTCAATGAGGTTGGGGTGCGGGCGACGGCGGAGATGGGTGAAAAGCAG-A 37516 Query 127518 CAG-CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGA 127576 ||| |||| || |||||||||||||||||| |||||||| || || ||||| || Sbjct 37515 CAGGCAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAAGTGAGG 37456 Query 127577 CCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAG 127636 || |||||||| || |||||||| | |||||| |||| ||| ||||||||||| ||| Sbjct 37455 CCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATCGAGGCAAACGAGCCAGAGAAAAAG 37396 Query 127637 ATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCA 127696 || ||||| || |||||||||| || ||||| |||||||| || | | || | Sbjct 37395 ATACCCTCGACGGCGGCGAACGCAATGAGGCGCTCAGCAAAGGA-CGAGCGCTCGTCGGA 37337 Query 127697 AA-CCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTC 127755 || ||| | ||||| | ||||| |||| ||| || |||| ||||| ||| || | Sbjct 37336 AATCCAACGGAGGGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGCCTT 37277 Query 127756 AAAGAG 127761 ||||| Sbjct 37276 GAAGAG 37271 >seq8 Length=1386445 Score = 122 bits (134), Expect = 1e-22 Identities = 196/276 (71%), Gaps = 12/276 (4%) Strand=Plus/Plus Query 127390 GTTCATACCGATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCAC 127449 ||| |||||||| || ||||||||||||||| | |||| ||||||| || || || Sbjct 724962 GTTGATACCGATAAGCGCACATGGGAGCGCGTCTGTCAGGAACTCCTTCTCTATTTCAAC 725021 Query 127450 AGCTTCCCGTACGATGGCGTGAATAGTGTCCACCCCAGGTCTAT--TGCGTAAAGTC--- 127504 ||||| ||||||| || | | | ||| | ||| | ||| | | | Sbjct 725022 CGCTTCGGTCACGATGGTGT--AGACT-TCCTCGTCAGAGCAGCGGTGCTTGAGATGCCC 725078 Query 127505 -TTGAAGAGTTCCACAGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATT 127563 | || ||| ||| ||||| || ||| | |||||| || || ||||| || ||||| Sbjct 725079 ATAGAGGAGG--CAC-GCAAAGTCGGTGTGAATACCCTCATCTCGAGAGATAAGCTCATT 725135 Query 127564 CGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGA 127623 |||||| || || |||||||||| |||||||| | |||||| || ||| |||||| Sbjct 725136 CGAGAATGTAAGGCCACGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGCAGCAAATGA 725195 Query 127624 GCCAGAGAAGAAGATCCCCTCCACACACGCGAACGC 127659 || ||||||||||| |||||||||||||| || || Sbjct 725196 TCCCGAGAAGAAGATGCCCTCCACACACGCAAAGGC 725231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506732200760