Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20montevideense_20[genbank_20GCA_5F001598995.1_202016- 03-01] 61 sequences; 24,872,216 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq6 131 3e-25 seq8 102 1e-16 >seq6 Length=1458149 Score = 131 bits (144), Expect = 3e-25 Identities = 332/495 (67%), Gaps = 14/495 (3%) Strand=Plus/Minus Query 203842 GTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGT 203901 ||| || ||||||||||||||||| | | || | | | | || |||||||||||||| Sbjct 936337 GTCAACGGTGAACTGAATGGCGTTGGCCGACGGGCGGGTACGGAGGTAGTACATGCCGGT 936278 Query 203902 CTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAG-TTTGCTCACGTTGGGGT 203960 ||| || || || ||| ||||| | ||||||||||| || | | ||| ||| | Sbjct 936277 CTTAAGACCACGCTTCCAGCCGTAGAAGTGCATGGAAGTAAGCTGCGAGAACGAAGGGTT 936218 Query 203961 CGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCC 204019 | | || ||| ||||| || ||||| |||||||| |||||| || || || ||||| Sbjct 936217 C-GACAGGTGGATGTTGAGCGACTGCGACTGGTCGAT-AAAGGCACCACGGTCAGCGGCA 936160 Query 204020 ATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA-CGTCTCTGGTGTG 204078 | | ||||| | ||||||||||||||||| || |||||| | | || || || | | Sbjct 936159 AGGTCGATAACTGCTTTCTGCGAAATCTCCCAGACAGTCTTGTAGATCGACT-TGATCTC 936101 Query 204079 TTGAGGCACATCTTCC---CACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATCC 204134 | || | |||| | || || |||||| || ||| || | | | Sbjct 936100 ATCGGGAA----TTCCAGGAATGTGCTGGATCGAACCACCAGAGGCGATGACGAGCTGCT 936045 Query 204135 TCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGA 204194 || | | || |||| | | | | |||| || || || | || |||| || || Sbjct 936044 TCATGTTGTCATCCCAGAGGTCGAGGTTGATGAGGTCACGGAGGAGCCAGGGGCAGACGA 935985 Query 204195 TCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACG 204254 ||| ||||| || || ||||| | |||| | | || | |||| | || ||||| Sbjct 935984 CCTGGAAGTCACCCGAAAGCACACGGCGGGAGTAGAGCATCGAGGTGTAGGGCTCGAAGC 935925 Query 204255 CCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGG 204314 |||||| ||| | |||||||| |||| || || ||||| || || | ||| || | Sbjct 935924 ACTCGTTCCAGCCAAGAATCTGAGAGGTGGAAGCAGTAGGCATAGGTGCGACGAGAAGCG 935865 Query 204315 AGTTGCGCACACCGT 204329 ||||||| ||||||| Sbjct 935864 AGTTGCGAACACCGT 935850 Score = 111 bits (122), Expect = 3e-19 Identities = 287/432 (66%), Gaps = 4/432 (1%) Strand=Plus/Minus Query 205165 CTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTC 205224 || ||| || ||||| || ||| || |||| ||||| ||||| || | || | || Sbjct 935095 CTTCATGAAGAGGTCAGGGACCCAGAGAGCGTAGAACAGGTCACGCGCGCGAACCTCCTC 935036 Query 205225 GTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCAAT-GTCGGCGTGCCACGGCTCTA 205283 | ||| ||||||| | ||| || ||| || || ||| || ||||| ||||| | Sbjct 935035 CTTTCCGTGGTTCTTGCGGAGGTCAAGG-AAGTCGAAAACGTCCGCATGCCAGGGCTCAA 934977 Query 205284 ACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCG 205343 | | ||| | || || || | |||||| ||||||||||| || || | ||| Sbjct 934976 GGTAGATGGCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCGACGTAACGGGCGGTCG 934917 Query 205344 CGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGG 205403 ||| | | | || ||||| || || | |||||||| | ||||| || | | |||| Sbjct 934916 CGTCGTAGGCACGGAGCATGGGGACAATACCGTTGGAGTAACCGTTGGTTCCGGCGATGT 934857 Query 205404 CCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGA 205463 |||||| | || | | |||| ||| ||||| || |||| | ||||| || Sbjct 934856 ACGAGCCCTTGGCACGAATGTTGTGAATGTGGAGACCAATGCCACCAGCAGTCTTGGAGA 934797 Query 205464 TCTGGGCGCA-CTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTC 205522 |||||||||| ||||| || ||| ||||||||| |||| || |||||| || | Sbjct 934796 TCTGGGCGCAGGTCTTG-AGGGTGTCGTAGATGCCGTCGATCGAGTCGTCCTTCATAGCG 934738 Query 205523 ACCAGATAGCACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTG 205582 || || ||||||| | || || | | || || |||| |||||| || ||| Sbjct 934737 ACGAGGAAGCACGACGACATCTGAGGGTGGGGAGTACCAGCGTTGAAGAGGGTCGGGGAA 934678 Query 205583 GCGTGGCTGAAG 205594 ||||| ||||| Sbjct 934677 GCGTGAGTGAAG 934666 >seq8 Length=1386445 Score = 102 bits (112), Expect = 1e-16 Identities = 177/253 (70%), Gaps = 7/253 (3%) Strand=Plus/Plus Query 159815 GGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAG 159874 |||||||| || | ||| ||||||||||| || || |||||||||||||| || || Sbjct 724984 GGGAGCGCGTCTGTCAGGAACTCCTTCTCTATTTCAACCGCTTCGGTCACGATGGTGTAG 725043 Query 159875 ACACGTTCGT-ACCCCGGCT-TGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGT 159932 || |||| | | || ||| | ||| || || | ||||||||||||||| Sbjct 725044 ACTTCCTCGTCAGAGCAGCGGTGCTTGAGATGC---CCATAGA--GGAGGCACGCAAAGT 725098 Query 159933 CGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGA 159992 || ||| | ||||| || |||||||| | ||| || || | | ||||| |||||| Sbjct 725099 CGGTGTGAATACCCTCATCTCGAGAGATAAGCTCATTCGAGAATGTAAGGCCACGCATGA 725158 Query 159993 TCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCA 160052 || ||| |||||||| || ||||| ||||| | || || ||||| ||||||| Sbjct 725159 GACCGCGCTTCTTGAGCCAGAAGATGGCAGCAAATGATCCCGAGAAGAAGATGCCCTCCA 725218 Query 160053 CGGCCGCAAACGC 160065 | |||||| || Sbjct 725219 CACACGCAAAGGC 725231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795154593694160