Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20montevideense_20[genbank_20GCA_5F001598995.1_202016- 03-01] 61 sequences; 24,872,216 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq7 158 1e-33 seq10 127 2e-24 >seq7 Length=1425097 Score = 158 bits (174), Expect = 1e-33 Identities = 369/556 (66%), Gaps = 12/556 (2%) Strand=Plus/Minus Query 132666 CATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAG 132725 |||||| || ||||| || | | ||||||| |||| | | || |||||||||| Sbjct 37744 CATAAAGTCGAAGGGATTCGTCGAGTTGTAGATCTTGTCGTTGCCAAGAGCGACGAGCAG 37685 Query 132726 CCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACG 132785 | |||||| |||||||| |||||||| ||||| || || | || | || Sbjct 37684 ACGGTCGGCGACGAACTCAATGTATTGGCACATGAGACCGGCGTTCATACCGATGAGCGA 37625 Query 132786 CACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTC 132845 ||| || ||||| ||||| || || || || || ||| || ||| || || | Sbjct 37624 CACGGGGAGCGCCTCGGTAAGGAACTCCTGTTCAATCTTGACGGCCTCGCGGATAATCTT 37565 Query 132846 CCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTC 132905 | || | | | | ||| || | | ||| |||| | || || |||||||| Sbjct 37564 CTCAATGAGGTTGGGGTGCGGGCGACGGCGGAGATGGGTGAAAAGCAGACAGGCAAAGTC 37505 Query 132906 GCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAG 132965 | || | |||||||| | || ||||| |||||| |||||| | |||||||||||| Sbjct 37504 GGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAAGTGAGGCCGGGCATGAG 37445 Query 132966 GCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGAC 133025 ||| || || |||||||| || || | ||| || ||| || || |||| |||||||| Sbjct 37444 GCCACGCTTCTTGAGCCAGAAGATCGAGGCAAACGAGCCAGAGAAAAAGATACCCTCGAC 37385 Query 133026 GGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAG 133085 ||| ||||| || | |||||||| | || | | | | || ||||| || || Sbjct 37384 GGCGGCGAACGCAATGAGGCGCTCAGCAAAGGACGAGCGCTCGTCGGAAATCCAACGGAG 37325 Query 133086 CGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAG 133145 ||||| |||||||| | |||| ||| || || || |||||||| || || ||| Sbjct 37324 GGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGCCTTGAA------GAG 37271 Query 133146 TTTCT-CTTCCG-----AGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGA 133199 | || | || | ||| | |||||||||||||||| || || | || || Sbjct 37270 GTACTGCCGGCGGGCGTTGTCACGAATGTAGGTGTCGATGAGGAGAGAGTAGGTCTCGGA 37211 Query 133200 GTGTACGTTCTCCATG 133215 ||| | ||||||| || Sbjct 37210 GTGAATGTTCTCCCTG 37195 Score = 132 bits (146), Expect = 5e-26 Identities = 146/192 (76%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| |||| |||||| | || Sbjct 29761 ATGCAGATTTTCGTCAAGACTCTCACTGGCAAGACCATCACCCTCGAGGTCGAGTCGTCC 29820 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || || | ||||| ||||| |||||| ||||||| Sbjct 29821 GACACTATCGACAACG-TGAAGGCGAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCA 29879 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | || ||||| ||||| || |||| || |||||| |||||||| Sbjct 29880 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAAGACGGTCGTACCCTCTCGGACTACAA 29939 Query 38423 CATCCAAAAGGA 38434 |||||| ||||| Sbjct 29940 CATCCAGAAGGA 29951 Score = 129 bits (142), Expect = 6e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| || ||||| | || || ||| | || Sbjct 29989 ATGCAGATTTTCGTCAAGACCCTCACTGGCAAGACTATCACTCTTGAAGTTGAGTCGTCC 30048 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || | || |||| ||||| ||||| |||||| ||||||| Sbjct 30049 GACACTATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 30108 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | ||||||||| ||||| || |||| ||||| || |||||||||| Sbjct 30109 CAGCGTCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCCGACTACAAC 30168 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || || ||||| ||||| |||| | || || ||| Sbjct 30169 ATTCAGAAGGAGTCGACGTTGCACCTTGTCCTTCGT 30204 Score = 114 bits (126), Expect = 1e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 38256 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA- 38314 || || || || |||||||| ||||||||| | || |||||| | | |||| | | | Sbjct 29036 GTCAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTCGAGTCTTCGGACACCATCGAC 29095 Query 38315 AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCAT 38374 |||| | || | || || | ||||| ||||| || || ||||||| ||||| ||||| Sbjct 29096 AACG-TCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCAGCAGCGTCTCAT 29154 Query 38375 TTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434 | || ||||| ||||| || |||| || |||||| |||||||||||||| ||||| Sbjct 29155 CTTTGCCGGCAAGCAGCTCGAGGACGGTCGTACCCTCTCGGACTACAACATCCAGAAGGA 29214 Query 38435 AGCGACGCTGCATTTGGTGCTGCGT 38459 |||| || ||| | || || ||| Sbjct 29215 GTCGACCCTTCATCTCGTTCTCCGT 29239 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAA 38323 || || ||||| || ||||| | || || ||| | | |||| | | | |||| | || Sbjct 29326 CTTACCGGCAAGACGATCACTCTTGAGGTTGAGTCTTCGGACACCATCGACAACG-TCAA 29384 Query 38324 AGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 | || |||| ||||| ||||| || || ||||||| ||||| ||||| | || || Sbjct 29385 GGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAGCAGCGTCTCATCTTTGCCGG 29444 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443 ||| ||||| || |||| || ||||| |||||||||||||||||||| |||| || Sbjct 29445 CAAGCAGCTCGAGGACGGTCGTACCCTTTCGGACTACAACATCCAAAAGGAGTCGACCCT 29504 Query 38444 GCATTTGGTGCTGCGT 38459 ||| | || || ||| Sbjct 29505 TCATCTTGTCCTCCGT 29520 >seq10 Length=927812 Score = 127 bits (140), Expect = 2e-24 Identities = 145/192 (76%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 38256 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGT-GCA 38314 || || || ||||||||||| || |||||| |||| || ||| | |||||| | | | Sbjct 76913 GTCAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGTCCGACACCATCGAC 76972 Query 38315 AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCAT 38374 |||| | || | || |||| ||||| ||||| || ||| ||||||| ||||| ||||| Sbjct 76973 AACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTCAT 77031 Query 38375 TTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434 | ||| ||||| ||||| || |||| |||||||| |||||||||||||| ||||| Sbjct 77032 CTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAACATCCAGAAGGA 77091 Query 38435 AGCGACGCTGCA 38446 |||| || || Sbjct 77092 GTCGACCCTCCA 77103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172418618240