Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20montevideense_20[genbank_20GCA_5F001598995.1_202016- 03-01] 61 sequences; 24,872,216 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq2 304 2e-77 seq13 158 2e-33 >seq2 Length=3077766 Score = 304 bits (336), Expect = 2e-77 Identities = 603/890 (68%), Gaps = 6/890 (1%) Strand=Plus/Minus Query 6923 GGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGT 6982 |||||||| |||||||| || |||| || | || ||||| | ||||| | || Sbjct 1501635 GGGGTCATGATACCACCAGCGGTCTCGATACCCATGGAGAGAGGGGCGACGTCGAGAAGA 1501576 Query 6983 AACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCC 7042 | ||||| || | ||| ||||| | | ||| | || ||||| | || Sbjct 1501575 AGGAGGTCCTGGGTGGCCTCGGAAGTCTCACCGTTGAGGATCGAAGCCTGGACGGCAGCA 1501516 Query 7043 CCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAA 7102 ||||| ||||| ||||| |||||||| || | || | || ||| || Sbjct 1501515 CCGTAGGCGACGGCCTCGTCGGGGTTGATGGAACGGTTGGGCTCACGGCCGGAGAACATG 1501456 Query 7103 TCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCA 7162 || || | ||| | || || || ||||| || ||||| ||||| || | ||||| || Sbjct 1501455 TCGGAGACCATCTTCTGGATCTTGGGGATACGGGTCGAGCCACCAACGAGGACGATCTCG 1501396 Query 7163 TTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACAT 7222 || || ||| || || ||||| ||||| || || || ||||| || ||||| Sbjct 1501395 TTGACCGACGACTTGTCAATCTTCGAGTCACGGAGGACCTTCTCGACGGGCTCCATGGTG 1501336 Query 7223 TTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAA 7282 ||||| | |||| || || ||||| ||||| ||||| || || || || ||||| Sbjct 1501335 GAGCGGAAGAGGTCCTGGCAGAGCTCCTCGAAACGGGCACGAGTGATCGAGGTGTAGAAG 1501276 Query 7283 TCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTT 7342 |||| ||||||| | | ||| ||||| || || | || || || | || || | || Sbjct 1501275 TCAATGCCGTCGAACAGCGAGTCAATCTCGATCGAGGTCTGAGCGGCAGACGAAAGGGTG 1501216 Query 7343 CGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATA 7402 ||||| || ||||| || || || || | |||||| || ||||| | ||| ||||| Sbjct 1501215 CGCTTAGCACGCTCGCAAGCAGTGCGGAGACGACGGAGAGCACGAGCGTTGGAAGAAATG 1501156 Query 7403 TCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTG-TCGA--AGGAGTCTCGAATCG 7459 || ||||| | || || || ||||| | |||||| | || ||| | | || Sbjct 1501155 TCCTTCTTGTTCTTGCGCTTGAACTCCTGGACGAAGTGGTTGACAAGGCGGTTG---TCA 1501099 Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519 || || |||||||| | ||| || || || ||||| || ||||| || |||||||| | Sbjct 1501098 AAGTCCTCACCACCAAGGTGGGTGTCACCAGCGGTGGCCTTGACCTCGAAGATACCCTCC 1501039 Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTC 7579 |||||| | | | ||| || || || ||||||||||| ||||| |||||||| |||||| Sbjct 1501038 TCAATGGTAAGGAGCGAGACGTCGAAAGTACCACCACCAAGGTCGAAAATGAGAACGTTC 1500979 Query 7580 GTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTA 7639 | || | || ||||| ||||||||||| ||||| || || || || || || || Sbjct 1500978 TTCTCACCCTCAGACTTCTTGTCGAGACCGTAAGCGATGGCGGCGGCGGTGGGCTCGTTG 1500919 Query 7640 ATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGC 7699 || ||||| || || || ||||| || || | || || || || || || || || Sbjct 1500918 ATGATACGGAGGACGTCAAGACCAGCGATGGTACCGGCGTCCTTGGTGGCCTGACGCTGA 1500859 Query 7700 GAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATAC 7759 || ||||| |||||||| ||||| || ||||| || | |||| | ||| || || Sbjct 1500858 GAGTCGTTGAAGTAGGCGGGGACGGTGACGACGGCCTTGCTGACGGTGCCACCAAGGTAG 1500799 Query 7760 GATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 | || ||| | || ||||| ||| | || ||||| || || ||||| || Sbjct 1500798 GCCTCGGCGGTCTCCTTCATCTTGATGAGGACCATGGACGAGATCTCCTC 1500749 Score = 165 bits (182), Expect = 1e-35 Identities = 197/267 (74%), Gaps = 3/267 (1%) Strand=Plus/Minus Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCT 7935 ||| ||||| | | ||| | ||||| ||| || |||| |||| | ||||| | Sbjct 1500633 GATGACCTTGAAGGGCCAGTGCTTCATGTCGGACTGAACCTCGGGGTCGGCGAACTTGCG 1500574 Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995 |||||||||||||| || || || || ||||| | |||||||||||| |||||||| Sbjct 1500573 GCCGATAAGACGCTTGGCGTCGAAGACGGTGTTGTAGGGGTTCATGGCGACCTGGTTCTT 1500514 Query 7996 CGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGT 8055 || || || ||||| ||||| ||| | | || || ||||| || || ||||| || Sbjct 1500513 GGCGGCATCACCGATGAGACGCTCAGAGT---CGGTGAAGGCGACATAAGAGGGGGTAGT 1500457 Query 8056 TCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCA 8115 || || || |||||||| || ||||| || ||||||||||| ||||||||| |||| || Sbjct 1500456 GCGGTTACCCTGGTCGTTGGCGATAATCTCAACGCGGTCGTTCTGCCAGACGGCGACACA 1500397 Query 8116 CGAATACGTTGTTCCTAAATCAATACC 8142 ||| || || || || | ||| ||||| Sbjct 1500396 CGAGTAAGTGGTGCCGAGATCGATACC 1500370 >seq13 Length=761807 Score = 158 bits (174), Expect = 2e-33 Identities = 323/478 (68%), Gaps = 4/478 (1%) Strand=Plus/Minus Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306 ||||| ||||| |||||||| ||| | |||| || || || | ||| | ||| || Sbjct 260080 TCCTCGAAACGGGCACGGGTGATGTTGGAGGAGAAGTCGACACCCTGGTAGAGCGAGTCG 260021 Query 7307 ATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTT 7366 | |||| ||| || || | ||| || | || ||||| || |||||||| || | Sbjct 260020 ACCTCAACGGTGGTCTGGGTAACCGACGAGAGAGTGCGCTTGGCACGCTCACAGGCGGAA 259961 Query 7367 CGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAAC 7426 || | ||| || || ||||| | || | || || || ||| | || || || ||| Sbjct 259960 CGGAGACGGCGGAGAGCACGGGCGTCGTCCGAGATGTCGAGCTTGTTCTTGCGCTTGAAC 259901 Query 7427 TCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCC 7486 || |||||| |||||| | ||||| || |||||||| | ||| || || Sbjct 259900 TCGGTCTTGAAGTGCTCAAGGAGGGTGTTGTCGAAGTCCTCACCACCAAGGTGGGTGTCA 259841 Query 7487 CCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAAC 7546 || || || || ||||| | |||| ||| || || | | ||| ||||| || Sbjct 259840 CCGGCAGTGGCCTTGACGGCGAAGACACCACCAGTGATCGAGAGGAGCGAGACATCGAAA 259781 Query 7547 GTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTG--TTCTTATCGA 7604 ||||||||||| ||||| || ||||| |||||| | || || ||| | |||| |||| Sbjct 259780 GTACCACCACCAAGGTCGAAGATGAGGACGTTCTTCTCCTC--CTTCGACTTCTGGTCGA 259723 Query 7605 GACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAG 7664 ||||||| || || || || || || || || || || ||||| || | ||||| | Sbjct 259722 GACCGTAGGCAATGGCGGCAGCGGTGGGCTCGTTGATGATACGGAGGACCTCGAGGCCGG 259663 Query 7665 CAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGAC 7722 |||| | | || || || || || | || ||||| ||||| |||||||| ||||| Sbjct 259662 CAATGGCACCAGCGTCCTTGGTAGCGAGACGCTGCGAGTCGTTGAAGTAGGCGGGGAC 259605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132315711240