Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20montevideense_20[genbank_20GCA_5F001598995.1_202016- 03-01] 61 sequences; 24,872,216 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq6 150 2e-31 seq7 132 6e-26 seq8 118 1e-21 seq13 107 2e-18 >seq6 Length=1458149 Score = 150 bits (166), Expect = 2e-31 Identities = 417/632 (66%), Gaps = 13/632 (2%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| | ||||| || | ||||||||||| || || | || || || Sbjct 934574 CCGCAGCACATGATTATGCGTGTTTCCATCGGTATCCACGGTGACAACATCGACAAGGTC 934633 Query 111672 TTGGAGACATACGACAAGATGTCC-CGTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 | ||||| ||| || |||||| | | || |||| ||||| | || |||||||| Sbjct 934634 ATTGAGACGTACAACCTCATGTCCGAGCGCTA-CTTCACTCACGCTTCCCCGACCCTCTT 934692 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 |||||||||||| || || || ||||| || ||||| | || | ||||| || Sbjct 934693 CAACGCTGGTACTCCCCACCCTCAGATGTCGTCGTGCTTCCTCGTCGCTATGAAGGACGA 934752 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 || ||| | ||||| |||| ||| |||| || ||||| ||||| ||| ||||| Sbjct 934753 CTCGATCGACGGCATCTACGACACCCTCAAGACCTGCGCCCAGATCTCCAAGACTGCTGG 934812 Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGT--ATTAGAGGTACA 111908 ||| || || | ||||| || | | | |||| | | ||||| || || || Sbjct 934813 TGGCATTGGTCTCCACATTCACAACATTCGTGCCA--AGGGCTCGTACATCGCCGGAACC 934870 Query 111909 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 111968 || ||| | || | |||||| | || ||||| || | | |||| || || || || Sbjct 934871 AACGGTTACTCCAACGGTATTGTCCCCATGCTCCGTGCCTACGACGCGACCGCCCGTTAC 934930 Query 111969 GTAAACCAAGCTGG---GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 112025 || |||| | ||| ||| || | | || |||| |||||||| ||||| Sbjct 934931 GTCGACCAGGGTGGCAACAAGCGCCCTGGTGCCTTTGCCATCTACCTTGAGCCCTGGCAT 934990 Query 112026 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC 112085 ||||| | | || |||||||| | || ||||| || | ||||||| || Sbjct 934991 GCGGACGTTTTCGACTTCCTTGACCTCCGCAAGAACCACGGAAAGGAGGAGGTTCGCGCG 935050 Query 112086 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 112145 || || || |||| |||||||||| | || || |||||||||||| | || |||| Sbjct 935051 CGTGACCTGTTCTACGCTCTCTGGGTCCCTGACCTCTTCATGAAGCGTGTCGAGGCCGAC 935110 Query 112146 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA--TGCCGTGGGTG 112203 || | ||| | ||| | || || | | || || ||||| |||| | | | | | Sbjct 935111 GGTGACTGGACCCTCATGTGCCCCGCCGAGTGCCCTGGTCTTGCCGACGTTCACTCG--G 935168 Query 112204 AGGAGTTTGAAGCCCTCTACACAAAGTACGAG 112235 |||||||||| |||| ||| ||||||||| Sbjct 935169 AGGAGTTTGAGACCCTGTACCAGAAGTACGAG 935200 >seq7 Length=1425097 Score = 132 bits (146), Expect = 6e-26 Identities = 126/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 |||||||||||||| ||| | || || || || ||||||||||| |||||||| || Sbjct 37352 TCCTTTGCTGAGCGCCTCATTGCGTTCGCCGCCGTCGAGGGTATCTTTTTCTCTGGCTCG 37411 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 || | | || | |||||||||||||| || |||||||| || ||| ||||||||| Sbjct 37412 TTTGCCTCGATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCTCACTTTCTCCAAC 37471 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||| ||||| ||||||||||| |||||| || ||||| Sbjct 37472 GAGCTCATCTCGCGTGACGAGGGTCTCCACACCGACTTTGC 37512 >seq8 Length=1386445 Score = 118 bits (130), Expect = 1e-21 Identities = 169/231 (73%), Gaps = 9/231 (4%) Strand=Plus/Minus Query 102105 CAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAG 102164 ||| |||| |||||||||| |||||| || || ||||| | |||| | || || Sbjct 725315 CAATCAGTCCCATGTATTCGAAAGAAGGCCGACTGGGCGCTCAAGTACATC---ACGAA- 725260 Query 102165 TCG-CGTTCCTTTGCTGAGC-GACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCT 102222 || | | || || | | |||| |||| ||||||||||| ||||| |||||||||| Sbjct 725259 -CGACATGCCGTTCCGCACTAGACTGATCGCCTTTGCGTGTGTGGAGGGCATCTTCTTCT 725201 Query 102223 CTGGTTCCTTCTGC-GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGC 102281 | || || || ||| || || | |||||||||||||| |||||||||| || || Sbjct 725200 CGGGATCATT-TGCTGCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCGTGGCCTTACA 725142 Query 102282 TTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 102332 ||||| || |||||||||||||| || ||||| | ||| || |||||| Sbjct 725141 TTCTCGAATGAGCTTATCTCTCGAGATGAGGGTATTCACACCGACTTTGCG 725091 >seq13 Length=761807 Score = 107 bits (118), Expect = 2e-18 Identities = 326/498 (65%), Gaps = 22/498 (4%) Strand=Plus/Plus Query 175841 CCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGAAG 175900 || ||||| ||||| || | ||||| |||||||||| ||| | ||| || | |||| | Sbjct 184493 CCTGTACCAATACCATCGGCGCCGTTGACGAGAACCAAGGGTACTGTAGGGAGGTAGTAC 184552 Query 175901 TCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCGGA 175960 || ||||| || | |||||| ||| | | ||||||||| || ||||| || | Sbjct 184553 TCGGGCTCGATCTGTTCACCATCTTCAACAAGATAGTTGAGGATCGGATCGTCGTCCTTG 184612 Query 175961 TCAAAGA---------TCTTTCGGGCATCTTTTGTGAGCTTTGTAAAGATATACCTCGTT 176011 | |||| || | |||| | ||||||| | |||| || |||| | Sbjct 184613 TGGAAGAGAAGGCGAGTCATGCGGGGAATATTTGTGAAAAT-GTAACGAGCG--CTCGCT 184669 Query 176012 TGAGACGCATCCTTACCACCCATGAGA-CGCGTACCAAACTGACCACACGGCTCAAGAAG 176070 ||||||||||| ||| ||| || |||||||||||||| ||||| || || Sbjct 184670 ------GCATCCTTACCTCCC-TGATTGCGAGTACCAAACTGACCGTTGGGCTCGAGGAG 184722 Query 176071 ATTGATATTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGA 176130 |||||| ||||| |||| ||| | ||| | || || ||| || |||| Sbjct 184723 ATTGATGTTGTTACTGCCCACAAAGTTTTGCGCGAGACCCACGATAGTGGCCTGGAGACT 184782 Query 176131 GACTTCACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGC-CAACTGCGCCACTT 176189 ||| |||||||| || || ||| ||| | ||| | ||| | || ||| || || | Sbjct 184783 CTGTTCGCCGTGGTGATATGCTGTCTGCTCAGAAACATA-GCCACTCAGCTGAGCAACCT 184841 Query 176190 TCATCTCATCCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCT 176249 ||| ||| ||| ||||| | ||| | || | ||||||||||| ||||| Sbjct 184842 TCAGATCAGAGGTGATCTTCTTTTTGAAGGCGCCATAGAGGACCTTGCGTTGACCAGGCT 184901 Query 176250 TGAGACCATCCGCCATGTGTGCGATAGAACGCTTCAAGTCCGCCAAACTGAAGTTGACGA 176309 |||| |||||||| | || |||||||| | ||| |||| |||| || || Sbjct 184902 TGAGGCCATCCGCAACCGATGGTATAGAACGAATGTTGTCGGCCATGGAGAAGAGGATGA 184961 Query 176310 GGTCCTTGTGTACAAAGT 176327 | ||||||| || |||| Sbjct 184962 GTTCCTTGTTCACGAAGT 184979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620741926683920