Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20montevideense_20[genbank_20GCA_5F001598995.1_202016- 03-01] 61 sequences; 24,872,216 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq6 214 2e-50 seq11 131 2e-25 seq8 104 3e-17 seq7 98.7 1e-15 >seq6 Length=1458149 Score = 214 bits (236), Expect = 2e-50 Identities = 1140/1810 (63%), Gaps = 37/1810 (2%) Strand=Plus/Minus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467 || || || ||||| || || || |||||| |||||| |||| | ||||| |||| Sbjct 936297 CGGAGGTAGTACATGCCGGTCTTAAGACCACGCTTCCAGCCGTAGAAGTGCATGGAAGTA 936238 Query 109468 AGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAAT 109527 || | || | | || || || | ||| | |||||| ||||| ||||| || Sbjct 936237 AGCTGCGAGAACGAAGGGTTCGACAGGTGGATGTTGAGCGACTGCGACTGGTCGATAAAG 936178 Query 109528 CGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTG 109587 |||||| ||||| || | |||||| | || || ||| ||||||||||||||| Sbjct 936177 GCACCACGGTCAGCGGCAAGGTCGATAACTGCTTTCTGCGAAATCTCCCAGACAGTCTTG 936118 Query 109588 TACAAATTCTTGATATCATCGGGAATGTCCACG-ATGTTTTGAATAGAGCCACCAGCCTT 109646 || | |||||| ||||||||||| |||| | |||| || || || ||||||| Sbjct 936117 TAGATCGACTTGATCTCATCGGGAAT-TCCAGGAATGTGCTGGATCGAACCACCAGAGGC 936059 Query 109647 CACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAACAAG 109706 | | ||| | |||||| | | |||||| ||| || |||| |||| || Sbjct 936058 GATGACGAGCTGCTTCATGTTGTCATCCCAGAGGTCGAGGTTGATGAG---GTCACGGAG 936002 Query 109707 ATGCTTGTTGACCACGAC---AAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGT 109763 || | | ||||| || ||||| | ||| || ||| ||||| | | Sbjct 936001 GAGCCAGGGGCAGACGACCTGGAAGTCACCCGAAAGCACACGGCGGGAGTAGAGCATCGA 935942 Query 109764 CGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCAT 109823 |||||||| ||||| ||||| || ||| || || || | |||||||| || ||||| Sbjct 935941 GGTGTAGGGCTCGAAGCACTCGTTCCAGCCAAGAATCTGAGAGGTGGAAGCAGTAGGCAT 935882 Query 109824 GGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCGTC 109883 || || | |||||| ||| || | ||| ||| | | | |||||| | |||| Sbjct 935881 AGGTGCGACGAGAAGCGAGTTGCGAACACCGTTCTTGGCGATCTTCTCACGGAGCTCGTC 935822 Query 109884 CCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTACACC 109943 ||| | | | | | | || |||| | || ||||| || Sbjct 935821 CCAGTTCCAGAGGTC------GGTGGGGATACGGCCCCAAAGGTCAAACTGAAGCTTGCC 935768 Query 109944 CTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGA 110003 || | || ||||||| | | ||| | || | ||| ||||| ||| | Sbjct 935767 CTGCGAGATGGGCGAACCCTCGTATGAAGGGTAGGTTCCAACCTCCTGGGCCATCTCACA 935708 Query 110004 TGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGGCGAGA 110063 || ||||| || || || || || || ||||| || || || || | |||||| Sbjct 935707 CGACGCCTCGAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGGAGGTTGAGCTGGCGAGC 935648 Query 110064 CTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCTAGACCCTGAACACC 110123 | |||||||||| | | || || | || || |||||||| ||||| Sbjct 935647 GGCGGGCGAGTCGAAGGGCATGCGGAGGGCCATGAAGGCGTCGGCAAGACCCTGGACACC 935588 Query 110124 GAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTT 110183 |||||| | ||||||||| |||||| ||| | || | |||||||| |||| Sbjct 935587 GAGACCGACGGGGCGATGGCGCATGTTCGAGTTTTTGGCCTCCTGAACGGGGTAGTAGTT 935528 Query 110184 GCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTC 110243 ||| |||||| | | || ||||| || || ||| ||||| || || || || | Sbjct 935527 GCGCGAGATGACGCAGTCAAGGTTCTTGGTAACGACCTTGGTGATCTCGTGAAGCTTCTT 935468 Query 110244 GTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAGATT 110303 | | || | || | | || | ||| | ||| || ||||| || ||||| || Sbjct 935467 GAAGTCATAGGTGCTGTTTTCAAAGTCGACGAACGCGGGAAGGGCAATGGAGGCAAGGTT 935408 Query 110304 GCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACT 110363 ||| || | | |||||| | ||| || | || || || || | |||||| Sbjct 935407 GCAGACGGCAACCTCGTCGGGAGAAGAGTACTCGATGATCTCAGTGCAGAGGTTGGACGA 935348 Query 110364 CTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCAT 110423 ||| || |||| || || ||| || || ||| |||| || ||||| ||||| || Sbjct 935347 CTTGATAGTGCCCAGGTGCTGCTGGTTAGACTTGCGGTTGGCAGCGTCCTTGTAGAGGAT 935288 Query 110424 GTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGG 110483 | | ||| |||||| || ||||| | || || ||||| ||| | || | || Sbjct 935287 GAAGGGGCCACCAGTCTCGGTCTGGGCCTCAAGGATGGCGAACCAGA-----GCTTCTGG 935233 Query 110484 GAC-AGTTGCGTTAGCGAGACCTT--CCTC---CTCGTACTTGGTGTACAAGTCCTCAAA 110537 | | | || | |||| |||| |||| ||||||||| ||||| | |||||| Sbjct 935232 GCCTTGATGGTCTTGCGA-CCCTTGCCCTCACGCTCGTACTTCTGGTACAGGGTCTCAAA 935174 Query 110538 TTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATT 110597 |||| || || || | |||||| || | |||| || | ||||| ||| | Sbjct 935173 CTCCTCCGAGTGAACGTCGGCAAGACCAGGGCACTCGGCGGGGCACATGAGGGTCCAGTC 935114 Query 110598 TCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTC 110657 || | |||| || | ||||||||| |||||||| | ||| | || |||| ||||| Sbjct 935113 ACCGTCGGCCTCGACACGCTTCATGAAGAGGTCAGGGACCCAGAGAGCGTAGAACAGGTC 935054 Query 110658 ACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATC 110717 ||| ||| |||| || | || ||||| ||| || || | ||||| | | || Sbjct 935053 ACGCGCGCGAACCTCCTCCTTTCCGTGGTTCTTGCGGAGGTCAAGGAAGTCGAAAACGTC 934994 Query 110718 CGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACGACG------ACCCGCCTG 110771 || ||||| || || || |||| || | || || | | || || |||| Sbjct 934993 CGCATGCCAGGGCTCAAGGTAGATGGCAAAGGCACC---AGGGCGCTTGTTGCCACCCTG 934937 Query 110772 GTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTG 110831 || || || || || || || | | || | | |||||| || | ||| || | ||| | Sbjct 934936 GTCGACGTAACGGGCGGTCGCGTCGTAGGCACGGAGCATGGGGACAATACCGTTGGAGTA 934877 Query 110832 ACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAAT 110891 ||| || || || || || ||||||||||||| ||| || || | |||||| Sbjct 934876 ACCGTTGGTTCCGGCGATGTACGAGCCCTTGGCACGAATGTTGTGAATGTGGAGACCAAT 934817 Query 110892 ACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGTGAGTGTACCATAAATACCATCAA 110950 ||||| || ||| || || || || ||| |||| || | || || || || | Sbjct 934816 GCCACCAGCAGTCTTGGAGATCTGGGCGCAGGTCT-TGAGGGTGTCGTAGATGCCGTCGA 934758 Query 110951 TCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCG 111010 |||| || |||| | || | || ||||| || ||||||||||| | || || || | Sbjct 934757 TCGAGTCGTCCTTCATAGCGACGAGGAAGCACGACGACATCTGAGGGTGGGGAGTACCAG 934698 Query 111011 CATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTGTTGTATGTGT 111070 | |||||||| || || | || ||| |||| | | |||||| |||||| || | Sbjct 934697 CGTTGAAGAGGGTCGGGGAAGCGTGAGTGAAGTAGCGCTCGGACATGAGGTTGTACGTCT 934638 Query 111071 CGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATATT 111130 | | | | | | | |||||| ||||| |||| ||| ||||| | ||| | | Sbjct 934637 CAATGACCTTGTCGATGTTGTCACCGTGGATACCGATGGAAACACGCATAATCATGTGCT 934578 Query 111131 GAGGCGTTTCGATTAGCTTTCCATCAACACGCTGAAGGTAACTCTTCTCTAGGGTCTTGA 111190 | || ||| | ||| || |||| ||| || || ||| |||||||||| Sbjct 934577 GCGGACGCTCGGCCACCTTGCCGTCAATGCGCAAGAGATATGAGCGCTCGAGGGTCTTGA 934518 Query 111191 GACCAAAGTA 111200 ||| ||||| Sbjct 934517 AACCGAAGTA 934508 >seq11 Length=847397 Score = 131 bits (144), Expect = 2e-25 Identities = 329/489 (67%), Gaps = 27/489 (6%) Strand=Plus/Minus Query 11496 AATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTT 11555 ||| | ||| |||||||| || || || | || || || || | ||| |||||| Sbjct 627292 AATGTGACGGTCGAAACGGCCGGGACGCATAAGCGCCGGGTCGAGGACGTCGGGACGGTT 627233 Query 11556 TGTAGCGGCAATGACTACAATGCCAGTCTCATTGTC---GAAACCGTCCATTTCTGTGAG 11612 ||| |||| | ||| |||||| ||| ||| | ||| |||||||| || || Sbjct 627232 GGTACCGGCCAGGACGACAATGTG---CTCCTTGCCACTGAAGCCGTCCATCTCAACCAG 627176 Query 11613 AAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATAC------CACCTGCCGA 11666 ||||||||||| ||| || ||||| ||||| | || || | | |||| Sbjct 627175 AAGCTGGTTGAGGGTCGACTCGCGCTCGTCGTTACCGC-CAAACTGTCCGCCCTTGCC-- 627119 Query 11667 ACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACG 11726 |||| ||| |||| ||||||||||||||||| || | ||| || || ||| || Sbjct 627118 ACGCGCCTTTCCGATTGCGTCAATCTCATCGATAAAGATGATGCAGGGAGCGTTCTTCCG 627059 Query 11727 TGCCTGTTCGAAAA--GTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACG 11784 || ||||||| | ||||| |||||| | || ||||| |||||||| || || Sbjct 627058 CGCAG--TCGAAAACAGATCACGGACACGCGAGGGACCGACACCGACGAACATTTCGACA 627001 Query 11785 AAGTTTGCGGCAGAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGC 11843 || | | | ||| || || | ||| || || || | |||||| || | || || Sbjct 627000 AACTCCGATCCGGAA-ACCGACAGGAACGGCACCTTGGCCTCACCGGCAGTCGCCTTTGC 626942 Query 11844 GAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGC 11903 || || ||||| || ||||| |||| || | ||||| ||| || |||||||||||||| Sbjct 626941 AAGCAGGGTCTTTCCGGTACCGGGTGGGCCGGAGAGAATGGCACCGCGGGGGATCTTGGC 626882 Query 11904 ACC--ACTTC-CAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTC 11960 ||| |||| | | | | | |||| ||||||||| | |||| |||| || || Sbjct 626881 ACCGAGCTTCTCGTACTTGGAC---GGCTCCTTGAGGAATTTGACAAACTCCATAATCTC 626825 Query 11961 CTCCTTGGC 11969 |||||| || Sbjct 626824 CTCCTTTGC 626816 >seq8 Length=1386445 Score = 104 bits (114), Expect = 3e-17 Identities = 101/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 |||| || ||||| |||||||| |||||||| ||| ||| ||| ||||||| || Sbjct 725104 TGAATACCCTCATCTCGAGAGATAAGCTCATTCGAGAATGTAAGGCCACGCATGAGACCG 725163 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||||||| ||| ||| || |||||||||||||||||||| Sbjct 725164 CGCTTCTTGAGCCAGAAGATGGCAGCAAATGATCCCGAGAAGAAGATGCCCTCCACACAC 725223 Query 119628 GCGAAAGCGA 119637 || || |||| Sbjct 725224 GCAAAGGCGA 725233 >seq7 Length=1425097 Score = 98.7 bits (108), Expect = 1e-15 Identities = 170/244 (70%), Gaps = 5/244 (2%) Strand=Plus/Minus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || || || || || || || ||||||||||| || ||| || || Sbjct 37513 GGCAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAAGTGAGGCC 37454 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 |||||||| || | ||||| ||||| ||||| | ||| ||||| || ||||| Sbjct 37453 GGGCATGAGGCCACGCTTCTTGAGCCAGAAGATCGAGGCAAACGAGCCAGAGAAAAAGAT 37394 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTCG---A 119670 ||||| || |||||| || | || |||||||| ||||| |||| || |||| | Sbjct 37393 ACCCTCGACGGCGGCGAACGCAATGAGGCGCTCAGC-AAAGGACGAGCGCTCGTCGGAAA 37335 Query 119671 ACCACTTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGA 119730 ||| ||| ||||||| |||||| || |||||||||| || | |||||| | || Sbjct 37334 TCCAACGGAGGGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGCCTTGA 37275 Query 119731 AAAG 119734 | || Sbjct 37274 AGAG 37271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975550905800