Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20montevideense_20[genbank_20GCA_5F001598995.1_202016- 03-01] 61 sequences; 24,872,216 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq7 114 8e-21 seq10 84.2 1e-11 >seq7 Length=1425097 Score = 114 bits (126), Expect = 8e-21 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||| | ||||| |||| || ||||| ||||| |||||||| ||| | || | || || Sbjct 29970 AACGAGGTGAAGTGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGACCGTCTTC 29911 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || |||||||| || || || |||||||| | || | ||||||||||| Sbjct 29910 AAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTG 29851 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||||| || ||| | || | || | ||| || |||| ||| ||||| || Sbjct 29850 AATCTTCGCCTTCACGTTGTCGATAGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTT 29791 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || ||||||||||| || || ||||||||| Sbjct 29790 GCCAGTGAGAGTCTTGACGAAAATCTGCATA 29760 Score = 113 bits (124), Expect = 3e-20 Identities = 144/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| |||||||||||||| ||| | || | || || ||||| || |||||||| Sbjct 29723 TCCTTCTGGATGTTATAGTCCGAGAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCAAAG 29664 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| |||||| ||||| Sbjct 29663 ATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGAC---- 29608 Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | | ||||| | ||| | ||| || || | ||| ||||| || || ||||||||||| Sbjct 29607 GTTGTCGATGGTGTCCGAAGACTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTT 29548 Query 34967 CACAAAGATCTGCATA 34982 || || ||||||||| Sbjct 29547 GACGAAAATCTGCATA 29532 Score = 89.7 bits (98), Expect = 3e-13 Identities = 131/183 (72%), Gaps = 8/183 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| |||||||| ||| | || | || || ||||| || |||||||| Sbjct 29214 TCCTTCTGGATGTTGTAGTCCGAGAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCAAAG 29155 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| |||||| ||||| Sbjct 29154 ATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGAC---- 29099 Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | | ||||| | ||| | ||| || || | ||| ||||| || ||||| || ||||| Sbjct 29098 GTTGTCGATGGTGTCCGAAGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTT 29039 Query 34967 CAC 34969 || Sbjct 29038 GAC 29036 >seq10 Length=927812 Score = 84.2 bits (92), Expect = 1e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| |||||||||||| | || | || || ||||| || ||||| || Sbjct 77091 TCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 77032 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| ||||| |||||| Sbjct 77031 ATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 76972 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | || | ||| || |||| ||| || || || |||||||| ||||| || Sbjct 76971 TCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGAC 76913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633358655208