Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20montevideense_20[genbank_20GCA_5F001598995.1_202016- 03-01] 61 sequences; 24,872,216 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq6 275 1e-68 seq7 147 4e-30 seq8 95.1 2e-14 >seq6 Length=1458149 Score = 275 bits (304), Expect = 1e-68 Identities = 737/1118 (66%), Gaps = 39/1118 (3%) Strand=Plus/Minus Query 221420 AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGAGA 221478 || |||||||||||||||||||| |||||| |||||| || | || |||| || Sbjct 935697 AGAGCAGCGTGGTAGATGGTCTCGAAGATCTGGAGGTTGAG-CTGGCGAGCGGCGGGCGA 935639 Query 221479 AGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGAT 221538 ||||||||| || || | ||| ||||||| || ||||| || |||| ||||| Sbjct 935638 GTCGAAGGGCATGCGGAGGGCCATGAAGGCGTCGGCAAGACCCTGGACACCGAGACCGAC 935579 Query 221539 GGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGAT 221598 ||| | || | | |||| || || || | ||||| || ||||| ||| Sbjct 935578 GGGGCGATGGCGCATGTTCGAGTTTTTGGCCTCCTGAACGGGGTAGTAGTTGCGCGAGAT 935519 Query 221599 CAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAA 221658 | || |||||| || | ||| || | |||| ||||||| |||| Sbjct 935518 GACGCAGTCAAGGTTCTTGGTAACGACCTTGGTGATCTCGTGAAGCTTCT------TGAA 935465 Query 221659 CACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAG 221718 | | | || || | | | || || || ||| ||||||| | ||| || Sbjct 935464 GTCATA---GGTGCTGTTTTCAAAG---TCGACGAACGCGGGAAGGGCAATGGAGGCAAG 935411 Query 221719 GTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCT 221778 ||| || ||||| |||||||| | |||| |||||||| || ||||||||| Sbjct 935410 GTTGCAGACGGCAACCTCGTCGGGAGAAGAGTACTCGATGATCTCAGTGCAGAGGTTGGA 935351 Query 221779 GCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAG 221838 ||||||| || |||||||| | || ||||||||||| |||||||||||||||||||| Sbjct 935350 CGACTTGATAGTGCCCAGGTGCTGCTGGTTAGACTTGCGGTTGGCAGCGTCCTTGTAGAG 935291 Query 221839 CATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAG-TTCTCTGG 221897 || ||||| || |||||||| ||| ||| | || || | |||||| |||| || Sbjct 935290 GATGAAGGGGCCACCAGTCTCGGTCTGGGCCTCAAGGATGGCGAACCAGAGCTTCT-GGG 935232 Query 221898 CGCTCACCGTC------CTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCA 221951 | | | ||| | |||| | ||| |||| ||| | |||| || | Sbjct 935231 CCTTGATGGTCTTGCGACCCTTGCCCTCACGCTCGTACTT-------CTGGTACAGGG-- 935181 Query 221952 TGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGAC 222011 | ||||||| || || | ||| | || || || ||| |||||| ||||| || Sbjct 935180 TCTCAAACTCCTCCGAGTGAACGTCGGCAAGACCAGGGCACTCGGCGGGGCACATGAGGG 935121 Query 222012 TCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAA 222071 |||||| || | | | ||| | || |||||||||||| |||| ||| || || | | Sbjct 935120 TCCAGTCACCGTCGGCCTCGACACGCTTCATGAAGAGGTCAGGGACCCAGAGAGCGTAGA 935061 Query 222072 AGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAA 222131 | || || | | || ||||||| |||| ||| || | || || | || || | Sbjct 935060 ACAGGTCACGCGCGCGAACCTCCTCCTTTCCGTGGTTCTTGCGGAGGTCAAGGAAGTCGA 935001 Query 222132 AAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCAC 222191 ||| ||| || ||||| ||||| || |||| ||| | || || || ||||||||||||| Sbjct 935000 AAACGTCCGCATGCCAGGGCTCAAGGTAGATGGCAAAGGCACCAGGGCGCTTGTTGCCAC 934941 Query 222192 CCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGG 222251 |||| || || | | |||| | || || || | || || | ||||||| Sbjct 934940 CCTGGTCGACGTAACGGGCGGTCGCGTCGTAGGCACGGAGCATGGGGACAATACCGTTGG 934881 Query 222252 ATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTT---ACTG-GCAGAC 222307 | ||||||||| || ||||||| || ||| | | ||| | || | ||| Sbjct 934880 AGTAACCGTTGGTTCCGGCGATGTACGAGCCCTTGGCACGAATGTTGTGAATGTGGAGA- 934822 Query 222308 ATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATG 222367 || || ||||| || || |||||| ||||||| ||||||| ||||| |||| Sbjct 934821 ---CCAATGCCACCAGCAGTCTTGGAGATCTGGGCGCAGGTCTTGAGGGTGTCGTAGATG 934765 Query 222368 CCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTG 222427 || || || ||||| ||||| | | || || || ||||||||||||| | || Sbjct 934764 CCGTCGATCGAGTCGTCCTTCATAGCGACGAGGAAGCACGACGACATCTGAGGGTGGGGA 934705 Query 222428 GAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCG 222487 | || ||||| || || || || ||||| || ||||||| | ||||| || | | Sbjct 934704 GTACCAGCGTTGAAGAGGGTCGGGGAAGCGTGAGTGAAGTAGCGCTCGGACATGAGGTTG 934645 Query 222488 TACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAAT 222525 |||||||| | ||| || |||||||||| ||||| || Sbjct 934644 TACGTCTCAATGACCTTGTCGATGTTGTCACCGTGGAT 934607 >seq7 Length=1425097 Score = 147 bits (162), Expect = 4e-30 Identities = 336/510 (66%), Gaps = 11/510 (2%) Strand=Plus/Plus Query 25795 GCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAAC 25854 ||||||||| ||| ||| ||||||||| |||||| |||||| | ||||| | Sbjct 37280 GCCATCGAGACCATCCCCTGCATCAAGAAGAAGGCCGACTGGGCCCTCCGTTGGATTTCC 37339 Query 25855 AGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTT 25914 | || || | | |||| ||||| || | || || || || || ||||| |||||| Sbjct 37340 GACGAGCGCTCGTCCTTTGCTGAGCGCCTCATTGCGTTCGCCGCCGTCGAGGGTATCTTT 37399 Query 25915 TTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTG 25974 ||| || |||||||| | ||||||||||||||| || || ||||||||| || Sbjct 37400 TTCTCTGGCTCGTTTGCCTCGATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCT- 37458 Query 25975 TACTTT-TCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCT 26033 ||||| ||||||||||||||| | |||||||||||||||| || |||||||| || Sbjct 37459 CACTTTCTCCAACGAGCTCATCTCGCGTGACGAGGGTCTCCACACCGACTTTGCCTGTCT 37518 Query 26034 GCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGAGACCGTC---TACAGTATCAT 26090 ||| | ||| ||| |||| | | | || | | || | | || || Sbjct 37519 GCTTTTCAC---CCA---TCTCCGCCGTCGCCCGCACCCCAACCTCATTGAGAAGATTAT 37572 Query 26091 CAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNT 26150 | ||||| || |||| || ||||||| | | Sbjct 37573 CCGCGAGGCCGTCAAGATTGAACAGGAGTTCCTTACCGAGGCGCTCCCCGTGTCGCTCAT 37632 Query 26151 GGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTG 26210 || |||||| | | |||||| ||||||||||||||| || ||||||| |||||| Sbjct 37633 CGGTATGAACGCCGGTCTCATGTGCCAATACATTGAGTTCGTCGCCGACCGTCTGCTCGT 37692 Query 26211 CCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACAT 26270 | || || || || |||||| || | || || |||||||||||||| | || Sbjct 37693 CGCTCTTGGCAACGACAAGATCTACAACTCGACGAATCCCTTCGACTTTATGGAGATGAT 37752 Query 26271 ATCGTTGGAAGGGAAGACCAACTTCTTTGA 26300 || || |||| ||| |||||||||| || Sbjct 37753 CTCTCTGCAAGGCAAGGCCAACTTCTTCGA 37782 >seq8 Length=1386445 Score = 95.1 bits (104), Expect = 2e-14 Identities = 118/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 25882 CTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTC 25941 ||| | |||||||| ||||||||||||||| ||| || || ||||| ||||||||| Sbjct 725237 CTGATCGCCTTTGCGTGTGTGGAGGGCATCTTCTTCTCGGGATCATTTGCTGCCATCTTC 725178 Query 25942 TGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTAC-TTTTCCAACGAGCTCATCAGCAG 26000 ||||||||| || || ||||| || || ||| || || || ||||| ||| | Sbjct 725177 TGGCTCAAGAAGCGCGGTCTCATGCGTGGCCT-TACATTCTCGAATGAGCTTATCTCTCG 725119 Query 26001 GGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTA 26039 || |||||| | |||| || ||||| ||||| ||||| Sbjct 725118 AGATGAGGGTATTCACACCGACTTTGCGTGCCTCCTCTA 725080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844091755840